SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80768

Length: 473 nt

Origin of reads: Inia v1

UniGene Fasta

>sp_v2.0_unigene80768
ATCGAAATCTGATGGAATTGCTGGTCTCTATCGTGGGTTCAACATTTCTTGTGTGGGAATTATAGTCTATCGTGGTTTATACTTTGGAATGTATGATTACTAAACTGAAGGCCTGTTGTTTTGACTGGTGATCTTCAGAATAACTTCCTTGCAAGTTCTCTTCTTGGTTGGGGTATTGCAATTGGTGCTGGTCTTGCATCGTATCCTATAGATACTGTACGAAGAAGAATGATGATGACTTCCGGTGAGGCAGTTAAGTACAAAAGTTCGTTGGACGCATTTAAACAGATTGTCCAAAACGAAGGTTCCAAGTCACTCTTCAAGGGTGCAGGTGCAAATATCCTCCGTGCTATTGCCGGGGCTGGTGTGTTAGCTGGATATGACCAGTTGCAGTTACTTCTTCTTGGGAAGAAATTTGGCTCCGGCGGTGGCTAATATGGATTTGATGATGGTGATAAATATTTAAGACAATG

Ace file of the UniGene sp_v2.0_unigene80768

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP,ATP carrier protein, putative n=1 Tax=Ricinus communis RepID=B9RVW7_RICCO	-	-	6.0e-40	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	adenylate translocator	-	-	7.80804e-42	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	7.80804e-42	92%
Blast2go	purine nucleotide transport	GO:0015865	Biological Process	7.80804e-42	92%
Blast2go	cytoskeleton organization	GO:0007010	Biological Process	7.80804e-42	92%
Blast2go	copper ion binding	GO:0005507	Molecular Function	7.80804e-42	92%
Blast2go	ATP:ADP antiporter activity	GO:0005471	Molecular Function	7.80804e-42	92%
Blast2go	cell wall	GO:0005618	Cellular Component	7.80804e-42	92%
Blast2go	cytoskeleton	GO:0005856	Cellular Component	7.80804e-42	92%
Blast2go	nucleolus	GO:0005730	Cellular Component	7.80804e-42	92%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	7.80804e-42	92%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	7.80804e-42	92%
Blast2go	mitochondrial envelope	GO:0005740	Cellular Component	7.80804e-42	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	7.80804e-42	92%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC6

Fln msg: Separated hits, possible frame ERROR between 97 and 124, your sequence is shorter than subject: 145 - 390

Fln protein: SKSDGIAGLYRGFNISCVGIIVYRGLYFGMYxxxxxxxxxxTGDLQNNFLASSLLGWGIAIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQIVQNEGSKSLFKGAGANILRAIAGAGVLAGYDQLQLLLLGKKFGSGGG*

Protein Length: 146

Fln nts: ATCGAAATCTGATGGAATTGCTGGTCTCTATCGTGGGTTCAACATTTCTTGTGTGGGAATTATAGTCTATCGTGGTTTATACTTTGGAATGTATGAxxxxxxxxxxxxxxxxxxxxxxxxxxxGACTGGTGATCTTCAGAATAACTTCCTTGCAAGTTCTCTTCTTGGTTGGGGTATTGCAATTGGTGCTGGTCTTGCATCGTATCCTATAGATACTGTACGAAGAAGAATGATGATGACTTCCGGTGAGGCAGTTAAGTACAAAAGTTCGTTGGACGCATTTAAACAGATTGTCCAAAACGAAGGTTCCAAGTCACTCTTCAAGGGTGCAGGTGCAAATATCCTCCGTGCTATTGCCGGGGCTGGTGTGTTAGCTGGATATGACCAGTTGCAGTTACTTCTTCTTGGGAAGAAATTTGGCTCCGGCGGTGGCTAATATGGATTTGATGATGGTGATAAATATTTAAGACAATG

Fln Alignment:

AllPineV4_rep_c133476___KSDGIAGLYRGFNISCVGIIVYRGLYFGMYDxxxxxxxxxTGDLQNNFLASSXXXXXXXXXXXXXSYPIDTVRRRMMMTSGEAVKYKSSLDAFKQIVQNEGSKSLFKGAGANILRAIAGAGVLA
A9NVC6_______________KSDGVAGLYRGFNISCVGIIVYRGLYFGMYDxxxxxxxxxTGDLQDNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFNQIVKNEGTKSLFKGAGANILRAIAGAGVLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain