SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80767

Length: 215 nt

Origin of reads: Inia v1

UniGene Fasta

>sp_v2.0_unigene80767
CTTTATAGACGAGGTTGATGCAATTGGAACGAAGCGTTTTGACAGCGAAGTAACGTGGAGTTTATAGAGAAGTGCAACGCACTATGCTTGAGTTACTGAATCAGCTTGATGGATTTAGCAGTGATGAACGTATAAAGGTCATAGCAGCAACAAATCGTGCAGATATTTTAGATCCGGCTTTAATGCGTTCAGGCCGTCTAGACAGAAAGATAGAA

Ace file of the UniGene sp_v2.0_unigene80767

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S protease regulatory subunit 6a, putative n=2 Tax=Magnoliophyta RepID=B9RFB5_RICCO	-	-	3.0e-24	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	26s proteasome regulatory particle triple-a atpase subunit5a	-	-	7.84902e-25	100%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	7.84902e-25	100%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		7.84902e-25	100%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo sac development	GO:0009553	Biological Process	7.84902e-25	100%
Blast2go	pollen development	GO:0009555	Biological Process	7.84902e-25	100%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	7.84902e-25	100%
Blast2go	proteasomal protein catabolic process	GO:0010498	Biological Process	7.84902e-25	100%
Blast2go	ATPase activity	GO:0016887	Molecular Function	7.84902e-25	100%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	7.84902e-25	100%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	7.84902e-25	100%
Blast2go	cytoplasm	GO:0005737	Cellular Component	7.84902e-25	100%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	7.84902e-25	100%
Blast2go	nucleus	GO:0005634	Cellular Component	7.84902e-25	100%

Source	InterPros	Term	Type	Identity
Sma3	NSF attachment protein	IPR000744	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX40

Fln msg: Separated hits, possible frame ERROR between 55 and 66, Distance to subject end: 86 aas, your sequence is shorter than subject: 72 - 424

Fln protein: FIDEVDAIGTKRFDSEVxxxxxREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIE

Protein Length: 73

Fln nts: CTTTATAGACGAGGTTGATGCAATTGGAACGAAGCGTTTTGACAGCGAAGTAACxxxxxxxxxxxxTAGAGAAGTGCAACGCACTATGCTTGAGTTACTGAATCAGCTTGATGGATTTAGCAGTGATGAACGTATAAAGGTCATAGCAGCAACAAATCGTGCAGATATTTTAGATCCGGCTTTAATGCGTTCAGGCCGTCTAGACAGAAAGATAGAA

Fln Alignment:

AllPineV4_rep_c133475___FIDEVDAIGTKRFDSEVTxxxxREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIE
A9NX40_______________FIDEVDAIGTKRFDSEVSxxxxREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain