SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80674

Length: 409 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene80674
CGTCGTGACCTTGGCTGTCACTCATCTTTCTTTCTGGTTGCTAAGCATGTATTAAACTTCTTTATGGAATACTAATTATATTAATTATTTTGATCAGGCCTTCTGGGCAGCTTGGCAAGGAGCTTGCACGAGTGCGTTGCCTTCTGTTTTCCTCGTTCCACAGGGAAAGAAGTATCTTGTTCGTCCTATCAACTTCAAGGGTCCTTGCCGTTGTTCTTGGACAATAGTTGCGCCAACGGACCTATGTAACTCAGAAGAACAAGGGGCATGGCTTCAATTCTCCTTGCAAGAAACAACAATCCAAGGTGGAGGCATTGTTGATCGGTCAGGCCAGAAATGGTGGGCATATTCTTGCGCCAACTTTAACAGCCAAAGTTGCGTAAGGAAAACCCCACTGGTAAGCTCCGCC

Ace file of the UniGene sp_v2.0_unigene80674

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase n=2 Tax=Arabidopsis thaliana RepID=F4I672_ARATH	-	-	6.0e-16	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	polygalacturonase	-	-	5.0814e-29	57%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0V2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 253 aas, your sequence is shorter than subject: 136 - 429

Fln protein: VVTLAVTHLSFWLLSMY*TSLWNTNYINYFDQAFWAAWQGACTSALPSVFLVPQGKKYLVRPINFKGPCRCSWTIVAPTDLCNSEEQGAWLQFSLQETTIQGGGIVDRSGQKWWAYSCANFNSQSCVRKTPLVSSA

Protein Length: 137

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTCTTTCTGGTTGCTAAGCATGTATTAAACTTCTTTATGGAATACTAATTATATTAATTATTTTGATCAGGCCTTCTGGGCAGCTTGGCAAGGAGCTTGCACGAGTGCGTTGCCTTCTGTTTTCCTCGTTCCACAGGGAAAGAAGTATCTTGTTCGTCCTATCAACTTCAAGGGTCCTTGCCGTTGTTCTTGGACAATAGTTGCGCCAACGGACCTATGTAACTCAGAAGAACAAGGGGCATGGCTTCAATTCTCCTTGCAAGAAACAACAATCCAAGGTGGAGGCATTGTTGATCGGTCAGGCCAGAAATGGTGGGCATATTCTTGCGCCAACTTTAACAGCCAAAGTTGCGTAAGGAAAACCCCACTGGTAAGCTCCGCC

Fln Alignment:

AllPineV4_rep_c132969___NYINYFDQAFWAAWQGACTSALPSVFLVPQGKKYLVRPINFKGPCR-------CSWTIVAPTDLC--NSEEQGAWLQFS-LQETTIQGGGIVDRSGQKWWAYSCANFNSQSCV
A9P0V2_______________NGVSDDSQAFLAAWNAACTSSSDSIFLVPHGKTYLVKPINFNGPCKTVHLTAQISGKIVAPADPCKWNPKERSVWLQFSNVQGLTIHGGGIIDGSGEKWWAGSCSRDTSHRCL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain