SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80628

Length: 563 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene80628
AAATGGTATTGAAGTATACAAATATCGAAGGAGGGGTTCTGGGAAAGAAACTGAGTGCTGCAAAGTTTGAGGTCAAATTCGTTCCCAGGAAAGAAGGGGGATGTGTCGCGAGCTGGATCTGTAATTACGAGACCCTTCCTGGTGCTCAGCTTGAAGAAAGCAAAGCAAAAGAGATAAAGGAAAATAGCATTGCCATGTTGAAGAAGATCGAGCAGTATCTGCTCTCCAATCCTTCTTTATACTGATCAACATATCTCTATGTGGATATGTCTTCGCATGCATTAATAGTTTAGTGCTGAGCATTATATGAATGAAACGGCAAAATAAAGAAAGCTGGTGATATGCCTTCGGCCCATCGTCCATAGTTCTCGTTATTTCTGGGCTGTAACACGCCCTCTACGTCTTTGCAATCGTAATTTTATCGTTACATATAATGTGCGTATTTCTCGTTATTTCTGGGCTGTAACATGCCCTCTACGTCTTTGCAATCGTAACTTTATCGTTACATATAATGTGTGTATTTCCATCCATATAAATAAATAAAATTTAAAGTTCCATACAAA

Ace file of the UniGene sp_v2.0_unigene80628 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pathogenesis-related protein 10 n=1 Tax=Pinus pinaster RepID=D9IWE1_PINPS	-	-	5.0e-38	98%
FL-Next	tr=Pathogenesis-related protein 10; Pinus pinaster (Maritime pine).	-	-	0.0	98%
Blast2go	intracellular pathogenesis-related protein	-	-	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bet v I domain	IPR000916	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D9IWE1

Fln msg: your sequence is shorter than subject: 81 - 160

Fln protein: MVLKYTNIEGGVLGKKLSAAKFEVKFVPRKEGGCVASWICNYETLPGAQLEESKAKEIKENSIAMLKKIEQYLLSNPSLY*

Protein Length: 82

Fln nts: AAATGGTATTGAAGTATACAAATATCGAAGGAGGGGTTCTGGGAAAGAAACTGAGTGCTGCAAAGTTTGAGGTCAAATTCGTTCCCAGGAAAGAAGGGGGATGTGTCGCGAGCTGGATCTGTAATTACGAGACCCTTCCTGGTGCTCAGCTTGAAGAAAGCAAAGCAAAAGAGATAAAGGAAAATAGCATTGCCATGTTGAAGAAGATCGAGCAGTATCTGCTCTCCAATCCTTCTTTATACTGA___TCAACATATCTCTATGTGGATATGTCTTCGCATGCATTAATAGTTTAGTGCTGAGCATTATATGAATGAAACGGCAAAATAAAGAAAGCTGGTGATATGCCTTCGGCCCATCGTCCATAGTTCTCGTTATTTCTGGGCTGTAACACGCCCTCTACGTCTTTGCAATCGTAATTTTATCGTTACATATAATGTGCGTATTTCTCGTTATTTCTGGGCTGTAACATGCCCTCTACGTCTTTGCAATCGTAACTTTATCGTTACATATAATGTGTGTATTTCCATCCATATAAATAAATAAAATTTAAAGTTCCATACAAA

Fln Alignment:

AllPineV4_rep_c132766___MVLKYTNIEGGVLGKKLSAAKFEVKFVPRKEGGCVASWICNYETLPGAQLEESKAKEIKENSIAMLKKIEQYLLSNPSLY
D9IWE1_______________MVLKYTNIEGGVLGKKLSAAKFEVKFVPRKEGGCVASWICNYETLPGAQLEESKAKEIKENSIAMLKKFEQYLLSNPSLY

SSRs (tot: 1)

Start position	End position	Sequence	Length
20	32	TTTA TTTA TTTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain