SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80621

Length: 478 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene80621
AAATTTTCACTTTTTTTGTTTGTGTTTGGGATTAAAACAGCTGTGATCCATTGATATGGAGGGTTGAGTAGGTTTGACCTGCTGGAAATAGTGGTGTGGCTGATCCAATTGGAGTGACAATGAAGAACTGTATTGCAGTTATCCAGATGGTGGCTTGTTTGATTGTTATGCTGGGAATAATGGGAGGTAGCCATAGTCATGAGAATGGAGGCATGGTAGTTCTGGCAGCTGAACTAACATCCACAATGACCCCAACCCCAGCACCAGCACCGGCACCAGTCTTCGCCAATCTGACAGCTCTTCTAATTTTAGCTGGGCCATTCAAGACTTTATTGAGTCTCTTGGAAGCCAGCGACCTGCTTACAACTCTACAAGCACAGGCAAACAACACAGAGCAAGGTATTACAATATTTGCACCATCTGATACTGCATTTTCTTCTCTCCCAAAGAAATACTGGCCAATCTCACGGCTGATCAG

Ace file of the UniGene sp_v2.0_unigene80621

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cell adhesion protein (Fragment) n=8 Tax=lamiids RepID=Q1W7G9_NICTO	-	-	2.0e-06	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	cell adhesion protein	-	-	1.97932e-23	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	FAS1 domain	IPR000782	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A936

Fln msg: Distance to subject end: 157 aas, your sequence is shorter than subject: 119 - 276

Fln protein: MKNCIAVIQMVACLIVMLGIMGGSHSHENGGMVVLAAELTSTMTPTPAPAPAPVFANLTALLILAGPFKTLLSLLEASDLLTTLQAQANNTEQGITIFAPSDTAFSSLPKKYWPISRLI

Protein Length: 120

Fln nts: AAATTTTCACTTTTTTTGTTTGTGTTTGGGATTAAAACAGCTGTGATCCATTGATATGGAGGGTTGAGTAGGTTTGACCTGCTGGAAATAGTGGTGTGGCTGATCCAATTGGAGTGACA_-_ATGAAGAACTGTATTGCAGTTATCCAGATGGTGGCTTGTTTGATTGTTATGCTGGGAATAATGGGAGGTAGCCATAGTCATGAGAATGGAGGCATGGTAGTTCTGGCAGCTGAACTAACATCCACAATGACCCCAACCCCAGCACCAGCACCGGCACCAGTCTTCGCCAATCTGACAGCTCTTCTAATTTTAGCTGGGCCATTCAAGACTTTATTGAGTCTCTTGGAAGCCAGCGACCTGCTTACAACTCTACAAGCACAGGCAAACAACACAGAGCAAGGTATTACAATATTTGCACCATCTGATACTGCATTTTCTTCTCTCCCAAAGAAATACTGGCCAATCTCACGGCTGATCAG

Fln Alignment:

AllPineV4_rep_c132734___MKNCIAVIQMVACLIVMLGIMGGSHSHENGGMVVLAAELTSXXXXXXXXXXXXVFANLTALLILAGPFKXXXXXXXXXXXXXXXQAQANNTEQGITIFAPSDTAFSSLPKK
D5A936_______________MKNCTSVIQILACLVLMVGLVGGSHSYEN-AMVVLAAKKTPTLTPTPAPAPGPAFANLTDLLSVAGPFTNILSLFEGSDLMETLQSQANDRKQGPTLFAPSDLAFSPLSKK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
337	33		66		0.997459
339		66	33		0.997459

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain