SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80605

Length: 470 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene80605
ACCCACGCACAGAATTTAGCCCAGGCCTCCTGCCTCAATCAGAGTGCTCAACTACCCACATTTTGGCCAGAACTTATTGACCTATAGCTTCAGGGATTTCTGTGTTAAATACACAAAGCATTTGGTTGAAATGTTCTGAGAATCAAACCGAGACTAACTGTAAAGTAGCAGATGTGGTTCTGGGCTTCGATACTCTCACTCCATACATGAATGGCACTTCCCCTTACTTTGGTGCCATTGTGGGGCGCGTGGCCAACAGAATCAAGGATGGAGAATTCACATTAGATGGCAAAACATATCATCTCCCTAAAAATGATGGGAACAATACACTCCATGGAGGAAAAAGGGGATTCGACAAGGTATTATGGAGGGTACAGAGACTGAAAAAGGGGCCTCGTCCATCTATACAGTTTACTTACCACAGTCGTGACGGTGAACAAGGTAGGAATGTCGCAGACACGTACGACATT

Ace file of the UniGene sp_v2.0_unigene80605

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aldose-1-epimerase, putative n=1 Tax=Ricinus communis RepID=B9SWV6_RICCO	-	-	6.0e-31	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	protein	-	-	1.13205e-39	77%

Source	InterPros	Term	Type	Identity
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Aldose 1-/Glucose-6-phosphate 1-epimerase	IPR008183	-	-
Sma3	Glycoside hydrolase-type carbohydrate-binding, subgroup	IPR014718	-	-
Sma3	Aldose 1-epimerase	IPR015443	-	-
Sma3	Aldose 1-epimerase, conserved site	IPR018052	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEE6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 200 aas, your sequence is shorter than subject: 156 - 398

Fln protein: PRTEFSPGLLPQSECSTTHILARTY*PIASGISVLNTQSIWLKCSENQTETNCKVADVVLGFDTLTPYMNGTSPYFGAIVGRVANRIKDGEFTLDGKTYHLPKNDGNNTLHGGKRGFDKVLWRVQRLKKGPRPSIQFTYHSRDGEQGRNVADTYDI

Protein Length: 157

Fln nts: ACCCACGCACAGAATTTAGCCCAGGCCTCCTGCCTCAATCAGAGTGCTCAACTACCCACATTTTGGCCAGAACTTATTGACCTATAGCTTCAGGGATTTCTGTGTTAAATACACAAAGCATTTGGTTGAAATGTTCTGAGAATCAAACCGAGACTAACTGTAAAGTAGCAGATGTGGTTCTGGGCTTCGATACTCTCACTCCATACATGAATGGCACTTCCCCTTACTTTGGTGCCATTGTGGGGCGCGTGGCCAACAGAATCAAGGATGGAGAATTCACATTAGATGGCAAAACATATCATCTCCCTAAAAATGATGGGAACAATACACTCCATGGAGGAAAAAGGGGATTCGACAAGGTATTATGGAGGGTACAGAGACTGAAAAAGGGGCCTCGTCCATCTATACAGTTTACTTACCACAGTCGTGACGGTGAACAAGGTAGGAATGTCGCAGACACGTACGACATT

Fln Alignment:

AllPineV4_rep_c132670___VADVVLGFDTLTPYMNGTS--PYFGAIVGRVANRIKDGEFTLDGKTYHLPKNDGNNTLHGGKRGFDKVLWRVQRLKKGPRPSIQFTYHSRDGEQG----RNVADTYDI
D5AEE6_______________LADVLLGYDYLASYMKASSSRPYFGALVGRVANRIKDGEFTINGKTYQLPKNDGNNTLHGGLTGFDNVLWKVREQRSGRKPSIKFTYHSFDGEQGFPGDLDVSATYTI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain