SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80591

Length: 472 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene80591
CGTCGTGACCTTGGCTGTCACTCAATCCGAACGTTATTTTTTCGATATTTGCCTCCTCACTTTCGATTTGTCTGCCGAGATCTCGATTTTTCGTTTCTTGGTATCATTGTGTGTTTTTTTCCTAGCTATAAAGAAATGGCTTCAGCTGAGACAACTGCAAGGCCTGTAGTTAACAATGTTGACAAAGAAAAGAAGCTGAGGGCTTCCCAGGGATCGAAGCCGTCACCTTCTCATCCTACATATCTTCAGATGATCACGGAAGCGATTACTTCTTTGAAGGAGAGGACCGGTTCCAGCCAGTATGCCATAGCAGCCTATATCGGCAACAAGTACCAGTCTCAACTCCCTGCCAATTTCAAGAAGCTGCTAGCAGTTCAGCTGAGAAATCTTGCCAGATCTGGTAAGCTTACCAAGGTCAAGAACTCTTTCAAACTTTCGGAAGAGTTGAAGAAGCCAGTGAAGCCGAATTCGC

Ace file of the UniGene sp_v2.0_unigene80591

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RX26_PHYPA	-	-	3.0e-27	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	histone-like protein	-	-	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Histone H5	IPR005819	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTL2

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 112 - 224

Fln protein: MASAETTARPVVNNVDKEKKLRASQGSKPSPSHPTYLQMITEAITSLKERTGSSQYAIAAYIGNKYQSQLPANFKKLLAVQLRNLARSGKLTKVKNSFKLSEELKKPVKPNS

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCGAACGTTATTTTTTCGATATTTGCCTCCTCACTTTCGATTTGTCTGCCGAGATCTCGATTTTTCGTTTCTTGGTATCATTGTGTGTTTTTTTCCTAGCTATAAAGAA_-_ATGGCTTCAGCTGAGACAACTGCAAGGCCTGTAGTTAACAATGTTGACAAAGAAAAGAAGCTGAGGGCTTCCCAGGGATCGAAGCCGTCACCTTCTCATCCTACATATCTTCAGATGATCACGGAAGCGATTACTTCTTTGAAGGAGAGGACCGGTTCCAGCCAGTATGCCATAGCAGCCTATATCGGCAACAAGTACCAGTCTCAACTCCCTGCCAATTTCAAGAAGCTGCTAGCAGTTCAGCTGAGAAATCTTGCCAGATCTGGTAAGCTTACCAAGGTCAAGAACTCTTTCAAACTTTCGGAAGAGTTGAAGAAGCCAGTGAAGCCGAATTCGC

Fln Alignment:

AllPineV4_rep_c132610___MASAETTARPVVNNVDKEKKLRASQGSKPSPSHPTYLQMITEAITSLKERTGSSQYAIAAYIGNKYQSQLPANFKKLLAVQLRNLARSGKLTKVKNSFKLSEELKKPVKPNS
C0PTL2_______________MASAETTAEPVANNVVKEKKPRASKGPKPPPSHPTYLQMITEAITSLKERTGSSQYAISAYISSKYQSHLPANFKKILTVQLRNLAKSGKLTKVKNSFKLSEELKKPVKPKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain