SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80538

Length: 825 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene80538 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 6-2 n=8 Tax=Magnoliophyta RepID=IF62_ARATH	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	eukaryotic translation initiation factor	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to abscisic acid stimulus	GO:0071215	Biological Process	95%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	95%
Blast2go	cytosol	GO:0005829	Cellular Component	95%
Blast2go	nucleolus	GO:0005730	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor IF6	IPR002769	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
511		12		87	0.992554
643			20	80	0.995493
644	20	80			0.995493
648	20			80	0.995493
649		80	20		0.995493
655		83	16		0.994516
656		83		16	0.994516
657	83	16			0.994516
660	83	16			0.994516
694		20		80	0.995505
697	20		80		0.995494
699			80	20	0.995498
701	80	20			0.9955
745		25	75		0.996474
746	66	33			0.997454
747	66	33			0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain