SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80506

Length: 1112 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene80506

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF674 domain containing protein	-	-	1.0e-25	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	unknow protein	-	-	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF674	IPR007750	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPV3

Fln msg:

Fln protein: MAAAPSENTPKPNAANSMTIKLMVSKKSRKILYAEAGKDFVDLLFSFLILPTGSIAKQSLLSKVTKEEDQAKVSCITNLYKSVESLSASLMKGDKAVLLDPKVVSTTYTTDILHIQSPSPPPPLYAAPPRYYVCSNAGSTYYTHSLSTQSGASTCACGNYVNREVKLVESKPPPVAAKDTVHTTGYVKKSANFVVTDDLTVIPVNSTATIVQLWNKLDVKEPTELEERNVTVGPNEVINFLMEIFLTNHIQCLGIKHSEINMDFCVNILLWNFFSQIIFNVWELSTVKLIWIFVLIFGDR*

Protein Length: 302

Fln nts: ATGGGGGTGACACACATTCATCAGGAATAGAAGCCACAGAGGGTTACC_-_ATGGCAGCTGCCCCGTCTGAAAATACACCTAAGCCGAATGCTGCTAATTCAATGACCATAAAACTGATGGTCAGCAAGAAAAGTCGTAAGATATTGTACGCAGAAGCAGGGAAGGATTTTGTCGATCTGCTATTCAGTTTTCTCATACTTCCAACTGGCTCCATTGCGAAGCAGTCACTGCTCTCCAAAGTTACTAAGGAGGAGGATCAGGCAAAAGTTTCTTGCATTACAAATCTTTATAAGAGCGTGGAGAGTCTGTCTGCATCGCTCATGAAAGGTGACAAAGCGGTTTTGTTAGACCCAAAGGTGGTTTCCACAACCTACACCACTGATATTTTACACATTCAATCTCCTTCTCCTCCTCCTCCTCTCTATGCTGCCCCTCCCAGGTACTATGTGTGTAGCAACGCTGGCTCCACCTACTATACACACAGTCTCAGCACCCAAAGTGGAGCTTCAACGTGTGCCTGCGGCAATTATGTAAACCGTGAAGTGAAGTTAGTGGAGTCCAAGCCGCCCCCTGTAGCCGCCAAGGATACAGTACATACAACGGGATATGTGAAGAAAAGTGCCAACTTTGTCGTCACAGACGACTTGACTGTAATTCCAGTTAATTCCACTGCCACGATTGTTCAGCTGTGGAATAAACTTGATGTCAAGGAGCCCACGGAATTGGAAGAGCGGAATGTTACAGTTGGTCCTAACGAGGTAATCAATTTTCTTATGGAAATTTTTCTCACAAATCATATTCAATGTTTGGGAATTAAGCACAGTGAAATTAATATGGATTTTTGTGTTAATATTTTGTTATGGAATTTTTTCTCACAAATCATATTCAACGTTTGGGAATTAAGCACAGTGAAATTAATATGGATTTTTGTGTTAATATTTGGTGACAGGTGA___TGGGTTTGCTAAAAGCCTCCATGGCTTCTAACACGGCGTTAAATGACGTTTTCAAAGCTCAGCCCAAGGTTAGTTATAAGTAGAAGGTTTAAATGGCCGGCCATTACTCTTACTTCTTGAAATTTTATTTCTTTATTTAAAATTAAAGGTTATGTTTTAAC

Fln Alignment:

AllPineV4_rep_c132229___MAAAPSENTPKPNAANSMTIKLMVSKKSRKILYAEAGKDFVDLLFSFLILPTGSIAKQSLLSKVTKEEDQAKVSCITNLYKSVESLSASLMKGDKAVLLDPKVVSTTYTTDILHIQXXXXXXXXXXXXXRYYVCSNAGSTYYTHSLSTQSGASTCACGNYVNREVKLVESKPPPVAAKDTVHTTGYVKKSANFVVTDDLTVIPVNSTATIVQLWNKLDVKEPTELEERNVTVGPNEVINFLMEIFLTN
A9NPV3_______________MATPQSQSTPKPNAANSMTIKLMVSKRSHKILYAEAGKDFVDLLFSFLILPTGAIAKQALVSKTTKEEDQTKVCCITNLYKSVESLSALLMKADKEVLLDPKVVSTTYTSDILRIQ-SPSSPPKPAAPPTYYVCYNAGSSSYTHSLSTQSGTSLCSCGNWVNREVKLVDK--PPVAAKAQVLPTGYVKKSANFVITDDLSVIPVNSTATIVQLWNKLDVKEPTELEERNVTVGANEVVGLLKAAMVSN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
434	12			87	0.992554
435		87		12	0.992554
436		87	12		0.992554
437		87	12		0.992554
438	87		12		0.992554
643	66		33		0.997452
675	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
404	418	CTC CTC CTC CTC CTC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain