SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80480

Length: 582 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene80480

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Defensin-1 n=1 Tax=Pinus sylvestris RepID=DEF1_PINSY	-	-	1.0e-32	77%
FL-Next	sp=Defensin-1; Pinus sylvestris (Scots pine).	-	-	0.0	88%
Blast2go	defensin	-	-	6.05221e-42	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to fungus	GO:0050832	Biological Process	6.05221e-42	81%
Blast2go	defense response to Gram-negative bacterium	GO:0050829	Biological Process	6.05221e-42	81%
Blast2go	extracellular region	GO:0005576	Cellular Component	6.05221e-42	81%

Source	InterPros	Term	Type	Identity
Sma3	Knottin	IPR003614	-	-
Sma3	Gamma thionin	IPR008176	-	-
Sma3	Gamma Purothionin	IPR008177	-	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
176		20		80	0.999996
178	80			20	0.999996
179		20		80	0.999996
183		20	80		0.999996
184		20	80		0.999996
189	77		22		0.999999
191		22		77	0.999999
197	77	22			0.999999
198			80	20	0.999996
199		20	80		0.999996
200	20		80		0.999996
242	10		90		0.902995
273		90		10	0.903175
470		87		12	0.992554
472			12	87	0.992555

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain