SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80466

Length: 919 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene80466 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Citrate synthase n=1 Tax=Picea sitchensis RepID=B8LLL1_PICSI	-	-	92%
FL-Next	sp=Citrate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	citrate synthase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Citrate (Si)-synthase.	EC:2.3.3.1	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	81%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	81%
Blast2go	Biosynthesis of phenylpropanoids	01061	81%
Blast2go	Biosynthesis of terpenoids and steroids	01062	81%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	81%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	81%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	81%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	81%
Blast2go	Biosynthesis of plant hormones	01070	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	81%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	81%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	81%
Blast2go	citrate (Si)-synthase activity	GO:0004108	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	cell wall	GO:0005618	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Citrate synthase-like	IPR002020	-	-
Sma3	Citrate synthase, eukaryotic	IPR010109	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Citrate synthase-like, large alpha subdomain	IPR016142	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
562		25		75	1.0
771	20	80			0.995497
774			80	20	0.995497
775	80			20	0.995497
795	50	50			1.0
796	50	50			1.0
797		50		50	1.0
798	50	50			1.0
800		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain