SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80438

Length: 974 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene80438 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pre-mRNA-processing factor 19 [Arabidopsis thaliana] sp\|Q94BR4.1\|PR19A_ARATH RecName: Full=Pre-mRNA-processing factor 19 homolog 1; AltName: Full=MOS4-associated complex protein 3A; Short=MAC protein 3A; AltName: Full=Plant U-box protein 59; AltName: Full	-	-	3.0e-39	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	ubiquitin-protein pub59	-	-	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Gibberellin regulated protein	IPR003854	-	-
Sma3	Pre-mRNA-splicing factor 19	IPR013915	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
513	75		25		0.996476
526		20		80	0.995493
883	81	18			0.999994
884	81	18			0.999994
885	9	63			1.0
888			9	72	0.999994
889		10	20		0.999998
890	88	11			0.923569
891		37	37	25	1.0
892		12		87	0.992555
893	42	14	42		1.0
894	42	57			1.0
895		50		50	1.0
897	42		42	14	1.0
901	42			57	1.0
903			42	57	1.0
904	57			42	1.0
908		42	42	14	1.0
909	83		16		0.994512
910	14	42		42	1.0
911	42		57		1.0
913			33	66	0.997452
915		33		66	0.997452
918	66	33			0.997452
919		33		66	0.997452
921	33			66	0.997452
928		25		75	0.996477
931		25	75		0.996477
933	66	33			0.997453
934		33	66		0.997453
935		33		66	0.997453
936		33		66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain