SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80326

Length: 391 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene80326
CGTCGTGACCTTGGCTGTCACTCATAAGAGGATTTCCTCCATCGAATTTGCAAGCTTTGGTAATCCTGAAGGAGAGTGTGGAAGTTTCAGAAAAGGGTCGTGTCCTTGCTGTCATTCATGGGGGACTGCTGAAAAGGTGTGCTTGGGACAGACTGCATGTTTTATGGATGTTTCATCAGAAACTTTTGGAGACAATCCATGTGTTGACACTACGAAGTCTCTAGCAGTTGAAGCAGTATGCAGCTGAATTTGATAAAAGCCCCTTATGCGATTTCCTGTATCATATGGAAGCTGTGATGCCATTACGAGTGCTGACTTCTTATGTCAGCATCCATATTTCTCGGGTAAATATGTTGTCTTAGCTCGGAGTGCAGTTGTTTCTATTATTTTA

Ace file of the UniGene sp_v2.0_unigene80326

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-galactosidase n=3 Tax=Populus RepID=B9MWS0_POPTR	-	-	1.0e-16	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	beta galactosidase 1	-	-	4.54869e-19	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-galactosidase.	EC:3.2.1.23	-	4.54869e-19	71%

Source	KEGGs	Term	e value	Identity
Blast2go	Galactose metabolism	00052	4.54869e-19	71%
Blast2go	Other glycan degradation	00511	4.54869e-19	71%
Blast2go	Glycosaminoglycan degradation	00531	4.54869e-19	71%
Blast2go	Sphingolipid metabolism	00600	4.54869e-19	71%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	4.54869e-19	71%
Blast2go	Metabolic pathways	01100	4.54869e-19	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	4.54869e-19	71%
Blast2go	beta-galactosidase activity	GO:0004565	Molecular Function	4.54869e-19	71%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	4.54869e-19	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	0.0	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPW7

Fln msg: your sequence is shorter than subject: 82 - 317

Fln protein: VVTLAVTHKRISSIEFASFGNPEGECGSFRKGSCPCCHSWGTAEKVCLGQTACFMDVSSETFGDNPCVDTTKSLAVEAVCS*

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAAGAGGATTTCCTCCATCGAATTTGCAAGCTTTGGTAATCCTGAAGGAGAGTGTGGAAGTTTCAGAAAAGGGTCGTGTCCTTGCTGTCATTCATGGGGGACTGCTGAAAAGGTGTGCTTGGGACAGACTGCATGTTTTATGGATGTTTCATCAGAAACTTTTGGAGACAATCCATGTGTTGACACTACGAAGTCTCTAGCAGTTGAAGCAGTATGCAGCTGA___ATTTGATAAAAGCCCCTTATGCGATTTCCTGTATCATATGGAAGCTGTGATGCCATTACGAGTGCTGACTTCTTATGTCAGCATCCATATTTCTCGGGTaAATATGTTGTCTTAGCTCGGAGTGCAGTTGTTTCTATTATTTTA

Fln Alignment:

AllPineV4_rep_c131274___KRISSIEFASFGNPEGECGSFRKGSCPCCHSWGTAEKVCLGQTACFMDVSSETFGDNPCVDTTKSLAVEAVCS
A9NPW7_______________RRISSIKFASFGNPKGVCGNFMKGTCHSVESEKAVEKACLGQHGCSITNSPKEFGGDACVGTVKSLAVEATCS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain