SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80290

Length: 319 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene80290
CGTCGTGACCTTGGCTGTCACTCATCTTGGAAAGTGATTTGGTGGCTGCCAGTGCGTTGTTGCAAAGATCGATGGCTTCGGGTAGAGTGGACTGCCTCTTGCATCAACGATAAATACTTTGGCAGATTCTTTGTATAAAGTTTTTTGTGCTTCATCTGATCAGGCGATGAAAGAGATGCGCCATGCTTTATTTGAGTATTTGAGATTAGGAGGTGTGTTTTCCAGTGGACCTGTGGCATTGCTGTCTGGTTTGAATCCACAGCCATTGAGTTTGTTCTGCATTTCTGGCGGTGCTGCATATGGTGTTGGTCGACTCTTG

Ace file of the UniGene sp_v2.0_unigene80290

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Squalene epoxidase n=2 Tax=Solanoideae RepID=D3YM76_9SOLA	-	-	2.0e-23	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	squalene monooxygenase	-	-	1.83631e-27	80%

Source	InterPros	Term	Type	Identity
Sma3	Glucose-inhibited division protein A-related	IPR002218	-	-
Sma3	Thiamine biosynthesis Thi4 protein	IPR002922	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	FAD dependent oxidoreductase	IPR006076	-	-
Sma3	Squalene epoxidase	IPR013698	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW92

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 59 aas, your sequence is shorter than subject: 106 - 529

Fln protein: VVTLAVTHLGK*FGGCQCVVAKIDGFG*SGLPLASTINTLADSLYKVFCASSDQAMKEMRHALFEYLRLGGVFSSGPVALLSGLNPQPLSLFCISGGAAYGVGRLL

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTGGAAAGTGATTTGGTGGCTGCCAGTGCGTTGTTGCAAAGATCGATGGCTTCGGGTAGAGTGGACTGCCTCTTGCATCAACGATAAATACTTTGGCAGATTCTTTGTATAAAGTTTTTTGTGCTTCATCTGATCAGGCGATGAAAGAGATGCGCCATGCTTTATTTGAGTATTTGAGATTAGGAGGTGTGTTTTCCAGTGGACCTGTGGCATTGCTGTCTGGTTTGAATCCACAGCCATTGAGTTTGTTCTGCATTTCTGGCGGTGCTGCATATGGTGTTGGTCGACTCTTG

Fln Alignment:

AllPineV4_rep_c131057___PLASTINTLADSLYKVFCASSDQAMKEMRHALFEYLRLGGVFSSGPVALLSGLNPQPLSLFC-ISGGAAYGVGRLL
A9NW92_______________PVASTINTLAGALYKVFCASPDQAMKEMRQACFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAVYGVGRLL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain