SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80254

Length: 263 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene80254
ATGGGGATGATTGAGTATATTTGAAGTTTCATATTACAGCAATGCGGGCAAGCGAGGCAAAGGCATTGCTGGGATTGGCTTCAGATGCCTTTCCTACTCAATCGGAGATCCTGTTTATTACAGCCAAGAAATTTCCAGATCTGCAAGACAAATCAGCTGGATACAAGTGTTAAAGCTGCATATAGAAGAAAGGTGTGGGAAAGTCATCCTGATCGTTTTCCTCATGGAGAAAAATCTCTTGCCGAGTCAAAATTCAAACTGGT

Ace file of the UniGene sp_v2.0_unigene80254

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chaperone DnaJ domain-containing protein [Arabidopsis thaliana] emb\|CAB71879.1\| putative protein [Arabidopsis thaliana] gb\|AAL25548.1\| AT3g62190/T17J13_150 [Arabidopsis thaliana] gb\|AAM91469.1\| AT3g62190/T17J13_150 [Arabidopsis thaliana] gb\|AEE80320.1\| ch	-	-	5.0e-06	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	heat shock protein n-terminal	-	-	3.30478e-08	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	0.0	-
Sma3		IPR015609	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A938

Fln msg: Separated hits, possible frame ERROR between 131 and 163, Distance to subject end: 79 aas, your sequence is shorter than subject: 74 - 136

Fln protein: MRASEAKALLGLASDAFPTQSEILFITAKxxxxxxxxxxxxTSVKAAYRRKVWESHPDRFPHGEKSLAESKFKL

Protein Length: 75

Fln nts: ATGGGGATGATTGAGTATATTTGAAGTTTCATATTACAGCA_-_ATGCGGGCAAGCGAGGCAAAGGCATTGCTGGGATTGGCTTCAGATGCCTTTCCTACTCAATCGGAGATCCTGTTTATTACAGCCAAGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTACAAGTGTTAAAGCTGCATATAGAAGAAAGGTGTGGGAAAGTCATCCTGATCGTTTTCCTCATGGAGAAAAATCTCTTGCCGAGTCAAAATTCAAACTGGT

Fln Alignment:

AllPineV4_rep_c130864___ITAMRASEAKALLGLASDAFPTQSEILFITAKKxxxxxxxxxxxTSVKAAYRRKVWESHPDRFPHGEKSLAESKFKL
D5A938_______________MTAMRASEAKALLGFGSDAFPTQSEVKAAYRKKxxxxxxxxxxxSEVKAAYRKKVWESHPDRFPPGEKSLAESKFKL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
16		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain