SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80141

Length: 721 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene80141 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phsophatase-2a, putative n=4 Tax=fabids RepID=B9S2G7_RICCO	-	-	3.99931e-42	84%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	protein phosphatase 2a catalytic subunit	-	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	93%
Blast2go	cytoplasm	GO:0005737	Cellular Component	93%
Blast2go	nucleus	GO:0005634	Cellular Component	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
209			25	75	0.996473
211		75		25	0.996473
212	75	25			0.996473
215		75	25		0.996473
217	75	25			0.996473
218	75		25		0.996473
341	25	75			0.996473
343		25		75	0.996473
345	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain