SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80126

Length: 281 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene80126
CGTCGTGACCTTGGCTGTCACTCAAACACTTCCTCTACCACTTTTTCTTACCAGTTACATTCTGAGAGGCTCCGGGGCCAGGGATATTTCAGCAACAATGCAGGGAGCTCACATATTGCTAGAGGAGCCTATTCGCTTGGCCTCCATTCTCGAGCCTGCTAAAGCAAATTTCTTTCCTGCAATGACAAAAATTATTGGTACTCTTGGACCACAGTCACGATCTGTTGAGGTGATTGAGGGTTGCCTTAAGGCTGGGATGTCTGTTGCCCGGTTTGATTTCT

Ace file of the UniGene sp_v2.0_unigene80126

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pyruvate kinase n=2 Tax=Picea sitchensis RepID=A9NUL1_PICSI	-	-	5.0e-24	90%
FL-Next	sp=Pyruvate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	pyruvate kinase	-	-	2.18989e-28	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	2.18989e-28	91%
Blast2go	transferase activity	GO:0016740	Molecular Function	2.18989e-28	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.18989e-28	91%

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Pyruvate kinase	IPR001697	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Pyruvate kinase, alpha/beta	IPR015794	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUL1

Fln msg: Distance to subject end: 466 aas, your sequence is shorter than subject: 61 - 527

Fln protein: MQGAHILLEEPIRLASILEPAKANFFPAMTKIIGTLGPQSRSVEVIEGCLKAGMSVARFDF

Protein Length: 62

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACACTTCCTCTACCACTTTTTCTTACCAGTTACATTCTGAGAGGCTCCGGGGCCAGGGATATTTCAGCAACA_-_ATGCAGGGAGCTCACATATTGCTAGAGGAGCCTATTCGCTTGGCCTCCATTCTCGAGCCTGCTAAAGCAAATTTCTTTCCTGCAATGACAAAAATTATTGGTACTCTTGGACCACAGTCACGATCTGTTGAGGTGATTGAGGGTTGCCTTAAGGCTGGGATGTCTGTTGCCCGGTTTGATTTCT

Fln Alignment:

AllPineV4_rep_c130180___MQGAHILLEEPIRLASILEPAKANFFPAMTKIIGTLGPQSRSVEVIEGCLKAGMSVARFDF
A9NUL1_______________MQGAHLLLEEPIRMASILEPSKANFFHAMTKIVGTLGPNSRSVEVIEGCLKAGMSVARFDF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain