SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80107

Length: 464 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene80107
CGTCGTGACCTTGGCTGTCACTCATTTATTGTCATGAATAGGCGTAATACTGAGAACTTGGTTGAGAATCTGCTTGGTGATTTTGAATACGAAGTCCAAGTTCCATATTTGCTTTATCGAAATGCAGCTCAGGAAGTGAATGGAATTTGGTTTTATGAACGACGTGATTGTGAAGATATTGCAAATCTTTTCAACAGCACCGAGTTTCAAGAGCTGGAAAGAGTCCCAACTTCAGCAATAATGGAGGGTCCTCTGGAGCCTACTGAAGCTGCTCTACCAAATGTCACAGAGCTGTCTGAAGAACCCTATGAATGCTTTTTTAATGGACCTTTGCACACAAACAATCCTTCAAATTTGACATCGTCAGCACCTATGCGGCCATTAACATCAACACACTCCTTACCAAGTCGTTCATTTCCAAGTTCAGCACCATCTCCACCAACGTCATACTCACTCCCCTTCGC

Ace file of the UniGene sp_v2.0_unigene80107

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mRNA decapping enzyme 1A, putative n=1 Tax=Ricinus communis RepID=B9SCX2_RICCO	-	-	7.0e-34	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	mrna-decapping enzyme-like protein	-	-	2.97636e-42	67%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.6.1.3-	-	2.97636e-42	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	deadenylation-independent decapping of nuclear-transcribed mRNA	GO:0031087	Biological Process	2.97636e-42	67%
Blast2go	m7G(5')pppN diphosphatase activity	GO:0050072	Molecular Function	2.97636e-42	67%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	2.97636e-42	67%
Blast2go	cytoplasmic mRNA processing body	GO:0000932	Cellular Component	2.97636e-42	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphopantetheine attachment site	IPR006162	-	0.0	-
Sma3	Dcp1-like decapping	IPR010334	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS3

Fln msg: Distance to subject end: 129 aas, your sequence is shorter than subject: 154 - 368

Fln protein: RRDLGCHSFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYERRDCEDIANLFNSTEFQELERVPTSAIMEGPLEPTEAALPNVTELSEEPYECFFNGPLHTNNPSNLTSSAPMRPLTSTHSLPSRSFPSSAPSPPTSYSLPF

Protein Length: 155

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTATTGTCATGAATAGGCGTAATACTGAGAACTTGGTTGAGAATCTGCTTGGTGATTTTGAATACGAAGTCCAAGTTCCATATTTGCTTTATCGAAATGCAGCTCAGGAAGTGAATGGAATTTGGTTTTATGAACGACGTGATTGTGAAGATATTGCAAATCTTTTCAACAGCACCGAGTTTCAAGAGCTGGAAAGAGTCCCAACTTCAGCAATAATGGAGGGTCCTCTGGAGCCTACTGAAGCTGCTCTACCAAATGTCACAGAGCTGTCTGAAGAACCCTATGAATGCTTTTTTAATGGACCTTTGCACACAAACAATCCTTCAAATTTGACATCGTCAGCACCTATGCGGCCATTAACATCAACACACTCCTTACCAAGTCGTTCATTTCCAAGTTCAGCACCATCTCCACCAACGTCATACTCACTCCCCTTCGC

Fln Alignment:

AllPineV4_rep_c130048___RRDLGCHSFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYERRDCEDIANLFN-------------------STEFQELERVPTSAIMEGPLEPTEAALPNVTELSEEPYECFFNGPLHTNNPSNLTSSAPMRPLT
B8LQS3_______________RRTQPRFQFIVMNRRSAENLVEDLLSDFEYEINLPYLLYRNANQEVIGIWFYDPRECDEVVKLFSRILNAFSKVPPKPKVFTNQSNEFQELESVPTSATIEGPLEP-PSSTSAITEASEEPLERFFSASLHLSNRPELSSLTSVRSST

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain