SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80053

Length: 685 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene80053

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] ref\|NP_680457.1\| uncharacterized protein [Arabidopsis thaliana] ref\|NP_001190570.1\| uncharacterized protein [Arabidopsis thaliana] ref\|XP_002866342.1\| hypothetical protein ARALYDRAFT_496097 [Arabidopsis lyrat	-	-	5.0e-10	58%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	75%
Blast2go	uncharacterized protein	-	-	2.19742e-19	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrial respiratory chain complex III	GO:0005750	Cellular Component	2.19742e-19	76%
Blast2go	mitochondrial proton-transporting ATP synthase complex	GO:0005753	Cellular Component	2.19742e-19	76%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
214	50	50			1.0
216		50	50		1.0
217		50	50		1.0
218			50	50	1.0
219		50	50		1.0
289	10		90		0.90298
291	90		10		0.90298
292		90	10		0.90298
293			10	90	0.90298
367			25	75	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
412	426	GAGCA GAGCA GAGCA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain