SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80040

Length: 536 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene80040
AATGTCCTAGGTAATATTCCAACCATTGCTTTCTGTGACACGGATTCACCAATGAAACATGTGGATATTGGGATACCTGCCAACAACAGGGAAAACATAGCATTGGATGCCTGTTTTGGATGCTTGCAAGAATGGTTCTGCAGATGCGAGGAACCATCCTTCCTGGTCATAAATGGGACATCATGGTTGATTTGTTCTTCTACAGAGAGGCCGACGAAGCTAAGGAGCACGAAGAGGAAGAGGCCCCTGTTGCTGAATATACTGCTGAGTATGTAGCACCTTCTCTCGCCCTTCCAGGAGGAGATCAGTGGGTGCTGATATTCCAGATGCACAATGGGGGGTCCCTGAACCTAGTGCAATCCCTGCTGTACCCGCGTTGGCCGTGTCTGACTGGCCCGGTGCTCCAGGTCCAGGGTGGGATGCTTCATCGATCCCTAGTATTCCGGCTGCCCCAGTGCCTGGTTGGGATAGTGCACAACCCAGCTGGGCTCCTGAAAGACTACAAGTAAGGGTTTAGTACTAGGAAATAAGTTTTA

Ace file of the UniGene sp_v2.0_unigene80040 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[J] COG0052 Ribosomal protein S2	-	-	7.0e-13	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	40s ribosomal protein sa (laminin receptor-like protein)	-	-	1.06743e-39	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	1.06743e-39	90%
Blast2go	mature ribosome assembly	GO:0042256	Biological Process	1.06743e-39	90%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	1.06743e-39	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.06743e-39	90%
Blast2go	nucleus	GO:0005634	Cellular Component	1.06743e-39	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.06743e-39	90%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S2	IPR001865	-	-
Sma3	Ribosomal protein S2, eukaryotic/archaeal	IPR005707	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0C9

Fln msg: Overlapping hits, possible frame ERROR between 126 and 87, and overlapping frame ERROR between 311 and 311, your sequence is shorter than subject: 173 - 319

Fln protein: NVLGNIPTIAFCDTDSPMKHVDIGIPANxxxxxxxxxxxxxxxRMVLQMRGTILPGHKWDIMVDLFFYREADEAKEHEEEEAPVAEYTAEYVAPSLALPGGDxxxADIPDAQWGVPEPSAIPAVPALAVSDWPGAPGPGWDASSIPSIPAAPVPGWDSAQPSWAPERLQVRV*

Protein Length: 174

Fln nts: AATGTCCTAGGTAATATTCCAACCATTGCTTTCTGTGACACGGATTCACCAATGAAACATGTGGATATTGGGATACCTGCCAACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAATGGTTCTGCAGATGCGAGGAACCATCCTTCCTGGTCATAAATGGGACATCATGGTTGATTTGTTCTTCTACAGAGAGGCCGACGAAGCTAAGGAGCACGAAGAGGAAGAGGCCCCTGTTGCTGAATATACTGCTGAGTATGTAGCACCTTCTCTCGCCCTTCCAGGAGGAGATCAxxxxxxTGCTGATATTCCAGATGCACAATGGGGGGTCCCTGAACCTAGTGCAATCCCTGCTGTACCCGCGTTGGCCGTGTCTGACTGGCCCGGTGCTCCAGGTCCAGGGTGGGATGCTTCATCGATCCCTAGTATTCCGGCTGCCCCAGTGCCTGGTTGGGATAGTGCACAACCCAGCTGGGCTCCTGAAAGACTACAAGTAAGGGTTTAGTACTAGGAAATAAGTTTTA

Fln Alignment:

AllPineV4_rep_c129614___LGNIPTIAFCDTDSPMKHVDIGIPANNxxxxxxxxxxxxxARMVLQMRGTILPGHKWDIMVDLFFYRXXXXXXXXXXXXXXXXXXXXEYVAPSLALPGGDQWGADIPDAQWGVPEPSAIPAVPALAVSDWPG------------APGP-----GWDXXXXXXXXXXPVPGWDSAQPSWAPE
A9P0C9_______________LGNIPTIAFCDTDSPMKHVDIGIPANNxxxxxxxxxxxxxARMVLQMRGTILPGHKWDIMVDLFFYREPEEAKEHEDEEAPVAEYTADYTAPALALP-GDQWGADIPDAQWGAPEPSAIPAVPALAASDWPGTAVPIAAEGWDTAPAPLPPAAEWNAASMPSIPAAPVPGWDSAQPGWTPE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
223	33	66			0.997453
225		33		33	0.997733
226		66	33		0.997455
227		66		33	0.997453
313	14	85			0.993533
314	14	85			0.993533
514	66	33			0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain