SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79932

Length: 254 nt

Origin of reads: Inia v1

UniGene Fasta

>sp_v2.0_unigene79932
CCTCCATGAGGTGTAATGGTTAAGGGCAAGTTGAAACCGTTTACCAGACTCAGAGTATATGAAGAAACATCATTGCCTCCATGATTATCTGCTGAGGTTGTTGAGAAAGAGTCTGAATCAGGAGGACAACTTGGTGACTTAGATTCTTATGAAATTGAAGGAGCTGAAACAAAAGGAGAAGTGCTGCAAAATCTTACTGAATTTCACATTGTTTGTGCTTTGTTCAATGCTTGTTTGGAAAGTGCTTGTAGTGA

Ace file of the UniGene sp_v2.0_unigene79932

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP synthase gamma chain n=1 Tax=Picea sitchensis RepID=A9NLA3_PICSI	-	-	9.0e-21	87%
FL-Next	sp=ATP synthase gamma chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	mitochondrial f1- gamma subunit	-	-	2.15614e-25	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	2.15614e-25	84%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	2.15614e-25	84%
Blast2go	cell wall	GO:0005618	Cellular Component	2.15614e-25	84%
Blast2go	mitochondrial proton-transporting ATP synthase complex	GO:0005753	Cellular Component	2.15614e-25	84%
Blast2go	nucleolus	GO:0005730	Cellular Component	2.15614e-25	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.15614e-25	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1 complex, gamma subunit	IPR000131	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLA3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 50 aas, your sequence is shorter than subject: 84 - 329

Fln protein: PP*GVMVKGKLKPFTRLRVYEETSLPP*LSAEVVEKESESGGQLGDLDSYEIEGAETKGEVLQNLTEFHIVCALFNACLESACS

Protein Length: 85

Fln nts: CCTCCATGAGGTGTAATGGTTAAGGGCAAGTTGAAACCGTTTACCAGACTCAGAGTATATGAAGAAACATCATTGCCTCCATGATTATCTGCTGAGGTTGTTGAGAAAGAGTCTGAATCAGGAGGACAACTTGGTGACTTAGATTCTTATGAAATTGAAGGAGCTGAAACAAAAGGAGAAGTGCTGCAAAATCTTACTGAATTTCACATTGTTTGTGCTTTGTTCAATGCTTGTTTGGAAAGTGCTTGTAGTGA

Fln Alignment:

AllPineV4_rep_c129021___LSAEVVEKESESGGQLGDLDSYEIEGAETKGEVLQNLTEFHIVCALFNACLESACS
A9NLA3_______________LSAEVAEKESEAGGTLGDLDSYEIEGSETKAEVLQNLSEFHIVCALFNACLESSCS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain