SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79757

Length: 410 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene79757
CGTCGTGACCTTGGCTGTGTCTCCATTTCTTTCAACATACATTGCCCCCTTACCTATTACATTCACCCAGTATCTGCTTCTTCTTCCCATTTCTTTCAACCTACATTGCCCCTTCCCTATTACGTTCACCCAGAGTCATCCATAATGGTGCTGGATGAGAATAGGCGCGTGACAGACCAGGGGCCTCGATATGACTGCCTTCTGTTTGATCTGGATGACACATTATATCCCTTAAGTTCAGGACTCGCTGCAGCATGCACCAACAACATCAGAGATTATGTGAATCAAAAACTGGGAGTTGAAAAGAGCAAAGTCGCAGACTTAAGCAGAGAGCTGTATCAGATTTATGGGACAACCATGGCTGGACTTAGGGCAATGGGCTATGAATTCGACTATGACGATTACCACAG

Ace file of the UniGene sp_v2.0_unigene79757

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ripening-related protein n=1 Tax=Vitis vinifera RepID=Q9M4H5_VITVI	-	-	7.0e-28	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	haloacid dehalogenase-like hydrolase domain-containing protein	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	Pyrimidine 5-nucleotidase	IPR010237	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL51

Fln msg: Distance to subject end: 187 aas, your sequence is shorter than subject: 88 - 276

Fln protein: MVLDENRRVTDQGPRYDCLLFDLDDTLYPLSSGLAAACTNNIRDYVNQKLGVEKSKVADLSRELYQIYGTTMAGLRAMGYEFDYDDYH

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTGTCTCCATTTCTTTCAACATACATTGCCCCCTTACCTATTACATTCACCCAGTATCTGCTTCTTCTTCCCATTTCTTTCAACCTACATTGCCCCTTCCCTATTACGTTCACCCAGAGTCATCCATA_-_ATGGTGCTGGATGAGAATAGGCGCGTGACAGACCAGGGGCCTCGATATGACTGCCTTCTGTTTGATCTGGATGACACATTATATCCCTTAAGTTCAGGACTCGCTGCAGCATGCACCAACAACATCAGAGATTATGTGAATCAAAAACTGGGAGTTGAAAAGAGCAAAGTCGCAGACTTAAGCAGAGAGCTGTATCAGATTTATGGGACAACCATGGCTGGACTTAGGGCAATGGGCTATGAATTCGACTATGACGATTACCACAG

Fln Alignment:

AllPineV4_rep_c128188___MVLDENRRVTDQGPRYDCLLFDLDDTLYPLSSGLAAACTNNIRDYVNQKLGVEKSKVADLSRELYQIYGTTMAGLRAMGYEFDYDDYH
A9NL51_______________MALDENRRVTDQRPRYDCLLFDLDDTLYPLSSGLAAACTNNIGDYVNQKLGVEKSRVPDLSRELYKTYGTTMAGLRAIGYEFDYDDYH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain