SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79673

Length: 506 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene79673
TGGTCTTTGTCTAAGTTACAAAAAAATGGAAAGTGGGTCGCTGTAGAACCCATTCCTAACGCCTTCGTTGTCAACCTGGGAGATCAAGTGCAGGTTGTGAGCAATGGGAGATTCAGAAGTGTTGAACATCGAGCAGTAACAAACGCGTCCACTGCACGCATATCAATTCCTACGTTCTTTATCCCTGCAATGGATGCCTTCATTGCTCCTGCAGCGTCCTTGGTTGATGGACAGCATCCGCCTATGTATAGAGGATATAAGTTTGAAGAATTCTGGAAAATTTTTCGAAGTAAGGGATTAACAGCATTATTGGATCATTTCAAAATAGAATATCCAGAGAATGCTCGTATTTGAATTAAATTTTGGTGTTCAGAGATGTGTGCGCCCTTTATTTGTAATGTGTGTTCAGAGTTCTAGACTCCAGACTAGCAGTGCACAACATGCAGTTTGCAGATCCGTCCCTCACATATATTTATGTATGTGATAGAAGGCATTTAATTTTGCTT

Ace file of the UniGene sp_v2.0_unigene79673

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gb\|AAD03425.1\| contains similarity to Iron/Ascorbate family of oxidoreductases (Pfam: PF00671, Score=297.8, E=1.3e-85, N=1) [Arabidopsis thaliana] emb\|CAB40043.1\| putative Fe(II)/a	-	-	9.0e-23	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	protein	-	-	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE21

Fln msg: your sequence is shorter than subject: 118 - 357

Fln protein: WSLSKLQKNGKWVAVEPIPNAFVVNLGDQVQVVSNGRFRSVEHRAVTNASTARISIPTFFIPAMDAFIAPAASLVDGQHPPMYRGYKFEEFWKIFRSKGLTALLDHFKIEYPENARI*

Protein Length: 119

Fln nts: TGGTCTTTGTCTAAGTTACAAAAAAATGGAAAGTGGGTCGCTGTAGAACCCATTCCTAACGCCTTCGTTGTCAACCTGGGAGATCAAGTGCAGGTTGTGAGCAATGGGAGATTCAGAAGTGTTGAACATCGAGCAGTAACAAACGCGTCCACTGCACGCATATCAATTCCTACGTTCTTTATCCCTGCAATGGATGCCTTCATTGCTCCTGCAGCGTCCTTGGTTGATGGACAGCATCCGCCTATGTATAGAGGATATAAGTTTGAAGAATTCTGGAAAATTTTTCGAAGTAAGGGATTAACAGCATTATTGGATCATTTCAAAATAGAATATCCAGAGAATGCTCGTATTTGA___ATTAAATTTTGGTGTTCAGAGATGTGTGCGCCCTTTATTTGTAATGTGTGTTCAGAGTTCTAGACTCCAGACTAGCAGTGCACAACATGCAGTTTGCAGATCCGTCCCTCACATATATTTATGTATGTGATAGAAGGCATTTAATTTTGCTT

Fln Alignment:

AllPineV4_rep_c127762___KNGKWVAVEPIPNAFVVNLGDQVQVVSNGRFRSVEHRAVTNASTARISIPTFFIPAMDAFIAPAASLVDGQHPPMYRGYKFEEFWKIFRSK--GLTALLDHFKIEYPE
D5AE21_______________KNGKWIAVQPLANAFVVNLGDQIQVVSNGRFRSVEHRAVTNASSARISIPMFCTPAEDAFIAPAASLVDEQHPPVYRGYKFEEFWKAFWSQVLGRKTVLDTFKIEYPE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain