SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79668

Length: 882 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene79668

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] ref\|NP_974317.1\| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj\|BAA97064.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL36202.1\| putative RNA-binding protein [Ar	-	-	3.0e-18	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	protein	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	68%
Blast2go	ethylene biosynthetic process	GO:0009693	Biological Process	68%
Blast2go	defense response	GO:0006952	Biological Process	68%
Blast2go	cell death	GO:0008219	Biological Process	68%
Blast2go	protein binding	GO:0005515	Molecular Function	68%
Blast2go	nucleolus	GO:0005730	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ17

Fln msg: Separated hits, possible frame ERROR between 145 and 148, and possible frame ERROR between 507 and 574, your sequence is shorter than subject: 240 - 536

Fln protein: VVTLLSLKLQQQLLPSMVPVQPIQPANLFQPATTDPNLRRVYVGNVPxxMQPARMTNFFSRYGDIEEGPGGFDRLTGKSKGYSLILYKTIEGANRALEDPVKSIDGHQLFCKLAFEGQKQKLAANPGQAVPDLKDKVDINHVSQYGGLGHGPVSQPLIGHRNTVNPSSxxxxxxxxxxxxxxxxxxxxxxxYGISSSSSVAQAAAYDGASQYPLASRQSQLPGTSPSSGLPGMRSFYTS*

Protein Length: 241

Fln nts: CGTCGTGACCTTGCTGTCACTCAAACTCCAACAACAACTTCTTCCATCCATGGTACCTGTACAGCCCATACAGCCAGCTAATCTCTTTCAGCCAGCTACAACTGATCCTAACTTACGGAGGGTCTATGTGGGTAATGTTCCTGAxxxCATGCAACCTGCTAGAATGACTAATTTTTTCTCTCGTTATGGAGACATTGAAGAAGGCCCTGGTGGTTTTGACAGACTAACTGGTAAGTCCAAAGGATACTCCCTTATTCTTTACAAAACAATTGAAGGAGCAAATCGAGCCCTGGAAGATCCTGTTAAATCAATAGATGGGCATCAACTTTTTTGTAAATTAGCATTTGAAGGACAAAAGCAGAAACTTGCAGCAAACCCGGGCCAAGCTGTTCCTGATTTGAAGGATAAAGTTGATATAAATCACGTTTCACAATATGGTGGACTGGGTCATGGGCCAGTCAGCCAACCACTTATTGGTCATCGGAATACCGTGAATCCATCATCATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTATGGGATTTCTTCAAGTTCATCTGTTGCCCAAGCTGCTGCATATGATGGAGCAAGTCAGTACCCCCTTGCATCTCGTCAAAGTCAACTCCCAGGGACATCTCCATCATCGGGACTCCCTGGCATGCGGTCTTTCTACACATCCTAGATACATGATATCTTTACAATGAGAGTGGAGAACTAAGAACTGTGTATGATGATCAAGGATGAGATTGGTGGCAATGGTTTTAAGGACTTCTGCTGGATTTTGGGTTTCACAAGCTTTGATGATGGTTGCTCCTGGTTGAAGATGGAATTGACAGCAGCAAGC

Fln Alignment:

AllPineV4_rep_c127748___MVPVQPIQPANLFQPATTDPNLRRVYVGNVPExMQPARMTNFFSRYGDIEEGPGGFDRLTGKSKGYSLILYKTIEGANRALEDPVKSIDGHQLFCKLAFEGQKQKLAANPGQAVPDLKDKVD-----INHVSQYGGLGHGPVSQPLIGHRNTVNPSSLxxxxxxxxxxxxxxxxxxxxxxYGIXXXXXXXXXXXYDGASQYPLASRQSQLPGTSPSSG-LPGMRSFYTS
C0PQ17_______________VAPLQPIQPVNPFQPATTDASLRRIYVGNVPDxMKPATLTSFFSNYGDIEEGPGGFDRNTGKSKGYSLILYRTIEAANRALEDPVKSIDGHQLFCKLAAEGLKQKGVTKQGQAVPELMDKGDANPASLNHVSQYGGLGHGPVNPALIAHQNTMNPTSLxxxxxxxxxxxxxxxxxxxxxxYGIPSSSSVAQTAAYDGASHYSLASHQSQLPGTSPSSGVLPGMRSYYTS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain