SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79651

Length: 521 nt

UniGene Fasta

>sp_v2.0_unigene79651
ATGGGGCCACACACACGCCCCACTGCCGCCTGGCTTGGGACGTTGGCACCGGCAGCGGTCAAGCTGCGCTTGCTGTAATCGTCTTTTCATTACCATTCAACCTGATCTCTGTTTCTTCAACTGCAGCTATTACATTTCATTTTGATGTTCTTGATTTTAATCGTCTTTTCATTACCATTCAACCTGATCTCTGTTTCTTGACCTGCTGCTCTTACATTTCATTTTGATGTTCTTGATTTTGATGTTGCAGTTGTCTGAGATATTCGAGAGCGTGATAGCGACGGATGTGAGCGAGCAGCAGATCAGTTACGCTCCCAGGCGCCCCAACATAACTTACGAGGTGACTCCCCGGGCGATGTCGGTGGAGGAGCTGGAGAGCACCGTAGGAGCAGGGGGGAGCGTGGATCTGGTGACGGTGGCGCAGGCTCTTCATTGGTTCGATCTGGGACCTTTTATGGGCATGTGAAGCACGTTCTGCGGAAGCCCGGTGGGGTATTTGCGGCGTGGTGCTACAGAGAACC

Ace file of the UniGene sp_v2.0_unigene79651

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	embryo-abundant protein [Picea glauca]	-	-	1.0e-34	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	embryo-abundant protein	-	-	8.57215e-35	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	8.57215e-35	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	8.57215e-35	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Methyltransferase type 11	IPR013216	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYZ8

Fln msg: Overlapping hits, possible frame ERROR between 460 and 448, Distance to subject end: 124 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 98 - 266

Fln protein: MFLILMLQLSEIFESVIATDVSEQQISYAPRRPNITYEVTPRAMSVEELESTVGAGGSVDLVTVAQALHWFDLxxxxxxVKHVLRKPGGVFAAWCYRE

Protein Length: 99

Fln nts: ATGGGGCCACACACACGCCCCACTGCCGCCTGGCTTGGGACGTTGGCACCGGCAGCGGTCAAGCTGCGCTTGCTGTAATCGTCTTTTCATTACCATTCAACCTGATCTCTGTTTCTTCAACTGCAGCTATTACATTTCATTTTGATGTTCTTGATTTTAATCGTCTTTTCATTACCATTCAACCTGATCTCTGTTTCTTGACCTGCTGCTCTTACATTTCATTTTG_-_ATGTTCTTGATTTTGATGTTGCAGTTGTCTGAGATATTCGAGAGCGTGATAGCGACGGATGTGAGCGAGCAGCAGATCAGTTACGCTCCCAGGCGCCCCAACATAACTTACGAGGTGACTCCCCGGGCGATGTCGGTGGAGGAGCTGGAGAGCACCGTAGGAGCAGGGGGGAGCGTGGATCTGGTGACGGTGGCGCAGGCTCTTCATTGGTTCGATCTGxxxxxxxxxxxxxxxxxxGTGAAGCACGTTCTGCGGAAGCCCGGTGGGGTATTTGCGGCGTGGTGCTACAGAGAACC

Fln Alignment:

AllPineV4_rep_c127650___SEIFESVIATDVSEQQISYAPRRPNITYEVTPRAMSVEELESTVGAGGSVDLVTVAQALHWFDLGxxxxHVKHVLRKPGGVFAAWCYRE
A9NYZ8_______________SEMFERVIATDVSEQQISYAPRRPNITYAVTARAMSLQELESTVGEEGSVDLVTVAQALHWLDLDxxxxHVKHVLRKPGGVFAAWCYRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain