SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79596

Length: 935 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene79596 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CUE domain containing protein	-	-	6.0e-05	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	cue domain containing expressed	-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin system component Cue	IPR003892	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLN7

Fln msg: Distance to subject end: 532 aas, your sequence is shorter than subject: 241 - 762

Fln protein: MDWKASFISLREVFPQVDERIIKAVALEHRNDVDSAVEFILNEVVPNQNDQIADAELDSERGIVDGPITEHDYHSGSEQLAPSSSHLSVCSISDDDASEVSDEIILTDRRSDSERIVAHLMQTKINEEHASSLLSVNSLTDQETIDSMEKSAFLVSIFSHLPNQTCDENTNETSGSSSQFNSSQSQTRIENKGFSPHLDDMGEIKGDQLSCDEKSLILTTHDSVGSGGFKNDSTLNVELDI

Protein Length: 242

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCATCCAAATGCTCAATTAGAGCAGGAAGAACGCTGGTAGTTTTTTGTCATTAGGTAACGTGAAGCTTCATGTTTCAGACGGATTGGACGCCTATAGTCGATATATGTACATTGTTTGTTCCTGCTAGGCTGTCTCTCGTTCTTTTAATAAACCCCAGCTATTCTCAAGAGTACATTCAGGAGGAGTG_-_ATGGATTGGAAGGCATCTTTCATCTCTCTTCGTGAAGTTTTCCCACAGGTTGATGAACGTATTATCAAGGCAGTTGCCCTGGAGCACCGCAATGATGTTGATTCAGCTGTGGAATTTATCCTTAATGAGGTGGTTCCTAACCAAAATGACCAAATAGCTGATGCGGAACTTGATAGTGAGCGTGGAATTGTGGATGGTCCAATTACTGAGCATGACTATCATTCAGGTTCTGAGCAGTTGGCACCAAGCTCATCTCATTTATCTGTTTGCTCTATATCTGATGATGATGCGTCTGAGGTGTCTGATGAAATCATATTGACAGATAGAAGATCAGATAGTGAACGCATTGTTGCTCATCTAATGCAAACTAAAATTAATGAAGAACATGCAAGCTCTTTATTGTCAGTTAATTCTTTGACTGACCAGGAAACAATTGATAGCATGGAAAAGAGTGCTTTTCTTGTGTCAATATTTTCACATCTACCTAATCAGACATGTGACGAAAACACCAACGAAACCTCTGGTTCATCAAGTCAGTTCAACTCTAGCCAATCTCAAACTAGAATTGAAAACAAAGGATTCAGTCCTCATTTGGATGATATGGGTGAAATTAAAGGTGACCAGCTGTCTTGCGATGAAAAATCTCTTATTTTGACAACTCATGATTCTGTTGGCTCGGGTGGGTTCAAAAATGACAGTACCCTGAACGTGGAGCTAGACATT

Fln Alignment:

AllPineV4_rep_c127341___MDWKASFISLREVFPQVDERIIKAVALEHRNDVDSAVEFILNEVVPNQNDQIADAELDSERGIVDGPITEHDYHSGSEQLAPSSSHLS-VCSISDDDASEVSDEIILTDRRSDSERIVAHLMQTKINEEHASSLLSVNSLTDQETIDSMEKSAFLVSIFSHLPNQTCDENTNETXXXXXXXXXXXXQTRIENKGFSPHLDDMGEIK
B8LLN7_______________MDWRTSFISLREIFPQVDERIIKAVALEHRNDVDSAVEFILNEVVPNQNDPIADVELDNKCGTVDGPITEHDCHLGSKESSPTSSHLSDCCSISDDDASEVSDVILLTDRRSVSERGDAHLMQTKINAEHASSSLSVNSLTDQETIDSIEKSVFLASKFSHLPKQSCDENTIQTSSSSCQF----------NKGFSSH--DLGKNK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
254	66			33	0.997467

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain