SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79471

Length: 655 nt

Origin of reads: Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene79471 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Uncharacterized GPI-anchored protein At3g06035; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	glycoprotein membrane precursor gpi-anchored protein	-	-	1.09021e-42	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	anchored to membrane	GO:0031225	Cellular Component	1.09021e-42	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.09021e-42	69%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
458		90	10		0.90298
459	10	90			0.90298
460			10	90	0.902984
463	10		90		0.902983
464		10		90	0.902987
467			10	90	0.902982
468	90	10			0.902982
469		10	90		0.902981
473			10	90	0.90298
476		10		90	0.90298
478	90	10			0.90298
481		10		90	0.90298
524	14			85	0.993535
535	66	16			0.988813
542		25		75	0.996473
544	20			80	0.995496
545		80	20		0.995496
546			20	80	0.995496
551		80	20		0.995495
568	66			33	0.997452
571			33	66	0.997452
577	33			66	0.997452
578			33	66	0.997452
579		33		66	0.997452
580		33	66		0.997452
584			25	75	0.996477
587	25			75	0.996477
589			25	75	0.996477
590	25		75		0.996477
592	75		25		0.996477

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain