SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79419

Length: 1523 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene79419 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	H+-transporting two-sector ATPase, C (AC39) subunit [Medicago truncatula]	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	v-type proton atpase subunit d2	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	proton transport	GO:0015992	Biological Process	94%
Blast2go	catalytic activity	GO:0003824	Molecular Function	94%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0 complex, subunit D	IPR016727	-	0.0	-
Sma3	ATPase, V0/A0 complex, subunit C/D	IPR002843	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLZ3

Fln msg: Overlapping hits, possible frame ERROR between 1208 and 1177,

Fln protein: MYGFEALTFNIHGGYLEAIVRGYRSGLLTTADYNNLSQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLSQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYNFCKKLGGATAEIMCDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRAAMEKYPPYQSIFAKISYGESQMLDKASYxxxxxxxxxxxxYVRLREQEIRNLMWVSECVAQNQKARVHDSIVFIF*

Protein Length: 343

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTGGAATTTCCCTCGTCATAATGTGATACTTGGGAAGCAATTACTGTATTACGTCGTGACCTTGGCTGTCACTCATTGGTCCTTTCACGCGAGCCTGCTCTCTCATCAGACATTGATACATTTCTCTGCGCACTGTGGGTGAGAGAGCGGATTCCAACCCGATCCAAACACCCATAAACCGATCCGTTCTTGTTGGAGGTTTAAAGGCCTAACAGGTTCAGATCTACTCTATACTAACATTAGTTTTGGAAATCAAAGTAGAAATC_-_ATGTATGGGTTCGAGGCGTTGACATTCAACATCCATGGAGGATACTTGGAGGCAATTGTGCGAGGATACAGGTCGGGCCTCTTGACAACGGCCGATTACAACAATCTAAGCCAGTGCGAGACGCTAGATGACATCAAAATGCACCTCTCCGCCACTGAATATGGCCCTTATTTGCAGAATGAGCCTTCGCCATTGCACACAACCACCATTGTGGAGAAATGTACTTTGAAATTGGTGGATGAATACAAACACATGCTTTCTCAAGCTACTGAGCCACTGTCTACTTTCCTTGAATATATTACTTATGGTCACATGATTGACAACGTAGTTCTCATTGTTACTGGCACGTTGCACGAAAGGGATGTTCAAGAATTGCTAGAAAAATGTCATCCTTTGGGCATGTTCGACAGTATTGCAACACTTGCAGTTGCCCAGAATATGCGAGAGCTGTATAGACTGGTGCTTGTGGACACACCTTTGGCTCCTTATTTTTCAGAATGCATTACCTCCGAGGATCTTGATGATATGAATATTGAAATTATGCGGAATACACTCTATAAAGCATATCTTGAGGACTTCTATAATTTTTGCAAGAAATTGGGAGGTGCTACTGCAGAAATAATGTGTGATTTGTTGGCATTTGAAGCTGACCGAAGAGCGGTTAACATTACAATAAATAGTATTGGGACAGAGTTGACTCGTGATGATCGGCGGAAGCTTTATTCTAATTTTGGCTTGCTGTACCCTTACGGTCATGAAGAACTTGCTGTCTGTGAGGATATTGATCAGGTCCGTGCGGCTATGGAAAAGTATCCACCATATCAATCAATATTTGCTAAAATTTCGTATGGAGAAAGTCAGATGTTGGATAAAGCGTCGTACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGTGAGGCTGCGGGAGCAGGAAATCAGGAACCTAATGTGGGTTTCTGAATGTGTTGCTCAGAACCAGAAGGCCAGAGTTCATGACAGTATTGTTTTCATATTCTAG___GCATTGTCTTCAGAGCAGATGGCTATATGCTGAGCCATCAAATCAAATATGCCTTACCCTAATGATTCTATGATTTTCTTGTATTTTAACTTGTCAAGCAGCTGTATCATGGTTTCCAGCAAACTGCTTAAGCAATTTTTAGCTGCCTTGGTGTGTTACATATGTTCTATTGGGTATTATCATGAAACTTCTAGTATGCAGAACCT

Fln Alignment:

AllPineV4_rep_c126225___MYGFEALTFNIHGGYLEAIVRGYRSGLLTTADYNNLSQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLSQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYNFCKKLGGATAEIMCDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRAAMEKYPPYQSIFAKISYGESQMLDKASYEEELSLWCLLYKKNFHYGVFFTYVRLREQEIRNLMWVSECVAQNQKARVHDSIVFIF
B8LLZ3_______________MYGFEALTFNIHGGYLEAIVRGYRSGLLTTADYNNLSQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLSQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYNFCKKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGAMEKYPPYQSIFSKISYGESQMLDKSFYEEEVKRFCLAFEQQFHYGVFFAYVRLREQEIRNLMWVSECVAQNQKSRVHDSIVFIF

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
939		20		80	0.995493
986	66	33			0.997452
995			25	75	0.996474
996	75	25			0.996475
997			25	75	0.996475
998	25			75	0.996475
999	25	75			0.996475
1377		80		20	0.995493
1382	80			20	0.995493
1385	80	20			0.995493
1391		20		80	0.995493
1395			16	83	0.994516
1400		16		83	0.994516
1403		16		83	0.994516
1434			33	66	0.997452
1438			66	33	0.997452
1441	66			33	0.997452
1446		66		33	0.997452
1448	66			33	0.997452
1450			75	25	0.99649
1451		25	75		0.99649
1453		75		25	0.996486
1455		75		25	0.996478
1456			75	25	0.996478
1457	75			25	0.996478
1458		75		25	0.996478
1459			75	25	0.996478

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain