SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79411

Length: 1149 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene79411 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Fructose-bisphosphate aldolase n=3 Tax=Picea sitchensis RepID=A9NUH5_PICSI	-	-	96%
FL-Next	sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	probable fructose-bisphosphate aldolase chloroplastic-like	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	90%
Blast2go	pentose-phosphate shunt	GO:0006098	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	catalytic activity	GO:0003824	Molecular Function	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%
Blast2go	plastoglobule	GO:0010287	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Vesicle transport protein, SFT2-like	IPR011691	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX65

Fln msg: your sequence is shorter than subject: 293 - 393

Fln protein: MAASVLKAGVKLGTSQLTGQSLTQNIDSHKQPKAQRVSFPIRAGSYAEELVQTAKTIASPGRGILAIDESNATCGKRLASIGLENNETNRQAYRQLLLTTPGLGEYISGSILFEETLYQSTTDGRKFVDCLREQNIMPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEHKERATPEKVAEYTLKMLKRRVPPAVPGVMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTSLKTWKGLPENVEAAQRALLIRAKANSLAQLGRYSAEGESEESKKGMFVKGYTY*

Protein Length: 294

Fln nts: GTAGCAGCA_-_ATGGCAGCCTCTGTTCTGAAGGCCGGTGTGAAATTGGGCACTTCTCAATTGACTGGGCAGTCGCTCACACAAAATATCGATTCCCACAAGCAACCCAAAGCGCAGAGGGTCTCCTTTCCGATCAGGGCCGGATCATATGCCGAGGAACTTGTTCAAACCGCGAAAACTATAGCATCTCCCGGGCGTGGTATTCTTGCCATAGACGAGTCCAATGCAACTTGTGGGAAGAGGCTTGCTTCCATCGGACTTGAAAACAACGAAACCAACCGCCAAGCATACAGACAACTCTTGTTGACTACACCAGGACTGGGGGAGTATATTTCTGGTTCCATCCTTTTTGAAGAGACCCTATACCAGTCCACAACCGATGGGAGGAAATTTGTTGACTGTTTGCGAGAGCAGAATATTATGCCCGGCATCAAAGTTGACAAGGGTTTAGTTCCACTGCCAGGATCAAACAATGAATCTTGGTGCCAGGGTTTGGATGGATTAGCCTCAAGATCTGCTGAGCACAAGGAGAGAGCAACCCCTGAAAAGGTTGCAGAATACACTCTAAAAATGCTTAAGAGGAGGGTGCCACCAGCTGTTCCTGGGGTTATGTTCTTGTCTGGAGGACAGTCTGAGGTTGAGGCAACTTTGAATTTGAATGCAATGAACCAAAGCCCAAATCCATGGCATGTTTCCTTTTCATATGCACGAGCCTTGCAGAATACATCTCTCAAAACCTGGAAGGGTCTTCCAGAGAATGTTGAAGCAGCTCAGAGGGCGCTTCTTATTCGGGCCAAGGCTAATTCTCTGGCTCAGCTTGGGCGATACTCTGCTGAAGGTGAAAGTGAGGAGTCTAAGAAGGGAATGTTCGTTAAGGGATATACATATTAA___GAATGCGGGTCATAGTTTTCTTACTGGGAGAACTCGTTCAATGCGGATAGGTTAAGCTTTTACGTTTATTTATTTGGCACTTACAATCCTGAACTTTTTAAAGAGTTTATATTTTGGTCAATAATGGGCAAAGTGCAAATTGGTTGTAGCCTTTTACCCGATGTACAATCTTGAGAGTGTATGCCCCAACATAGATTTTTATTAATTTTCAGGGTACAAACTTTATCAGAGATTTAAGGTTCTCTTTTATCTTAAATTCCT

Fln Alignment:

AllPineV4_rep_c126171___MAASVLKAGVKLGTSQLTGQSLTQNIDSHKQPKAQRVSFPIRAGSYAEELVQTAKTIASPGRGILAIDESNATCGKRLASIGLENNETNRQAYRQLLLTTPGLGEYISGSILFEETLYQSTTDGRKFVDCLREQNIMPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEH
A9NX65_______________MAASVLKAGVRLGSSQWTGQSLTQNIDSHKQPKAQRVSMPIRAGSYAEELVQTAKTVASPGRGILAIDESNATCGKRLASIGLENNETNRQAYRQLLLTTPGLGEYISGSILFEETLYQSTTDGRKFVDCLREQNIMPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
807			66	33	0.997476
822	66		33		0.997467
823	66		33		0.997476
826		33		66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain