SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79392

Length: 743 nt

Origin of reads: Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene79392 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor [Capsicum annuum] gb\|AAR03592.1\| ARF-like small GTPase [Brassica juncea]	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	adp-ribosylation factor	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	GTP binding	GO:0005525	Molecular Function	93%
Blast2go	protein binding	GO:0005515	Molecular Function	93%
Blast2go	phospholipase activator activity	GO:0016004	Molecular Function	93%
Blast2go	vacuole	GO:0005773	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3		IPR006688	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
554		25		75	1.0
555		25	75		1.0
556	75	25			1.0
557		25	75		1.0
558		25		75	1.0
559		25	75		1.0
563			75	25	1.0
569	20		75		1.0
570	4	20	75		1.0
572		75	4	4	1.0
573	75		25		1.0
574		75		25	1.0
577	25	75			1.0
580		16		83	0.994512
585			16	83	0.994512
588	16			83	0.994512
589		16		83	0.994512
594			16	83	0.994512
632			75	25	0.996474
633			25	75	0.996476
634	25			75	0.996476
637	75		25		0.996473
642			25	75	0.996473
646	25			75	0.996473
648	25	50		25	0.995533
649		50	50		1.0
652		50		50	1.0
653		25	25	50	0.995535
654	50			50	1.0
658	75	25			0.996473
660	25		25	50	0.995533
661	33			66	0.997452
664	66		33		0.997452
666	66	33			0.997458
668	66	33			0.997455
669	66		33		0.997461
670	33			33	0.997689
671	33	33		33	0.99775

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain