SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79372

Length: 459 nt

Origin of reads: Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene79372
CTAATAGATTGAGCGATTGTGTCAGACTCCAATTGATTCGGCTAGTCACCCCTTAGTCAACTTCGGTTAAATCTAAACCAGTTAATTTGTTTCTAGGCGGCCCAAATTTCTGAATTTAGCGAACTGATTCGGATCTCGGCTCAAGAAGTGACAATCTTGAGTTTGTGAGAACCCTGTTAGCATATTGGCCAAACATGGCAGAAGATGACAATGCCTCACGTTATGTGAAGCTTACCAAGGAGCACGATGCTGCCATTGAAGAGAAAGCTATGAACCACCTGCTGATGAACATTGGACAACAGGAATCTGTGGTTGTGCTGAAGATCCTGAGAGTTGTTGGCGTGGCCCGTTCTGTCCATGCGTTTTGTTTGGGTACAACGTACAAAATATGAGGGATGACATACCTTGGACTGCACCATGTACTTGCCATGCAATCTTCGTTGAAGGTGGCATGGCATT

Ace file of the UniGene sp_v2.0_unigene79372 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PLAC8 family protein [Arabidopsis thaliana] gb\|AAM53291.1\| unknown protein [Arabidopsis thaliana] gb\|AAM64925.1\| unknown [Arabidopsis thaliana] gb\|AAN15679.1\| unknown protein [Arabidopsis thaliana] gb\|AAN41299.1\| unknown protein [Arabidopsis thaliana] dbj	-	-	4.0e-26	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	plac8 family protein	-	-	6.66738e-41	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLS3

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 120 aas, your sequence is shorter than subject: 88 - 237

Fln protein: MAEDDNASRYVKLTKEHDAAIExxSYEPPADEHWTTGICGCAEDPESCWRGPFCPCVLFGYNVQNMRDDIPWTAPCTCHAIFVEGGMA

Protein Length: 89

Fln nts: CTAATAGATTGAGCGATTGTGTCAGACTCCAATTGATTCGGCTAGTCACCCCTTAGTCAACTTCGGTTAAATCTAAACCAGTTAATTTGTTTCTAGGCGGCCCAAATTTCTGAATTTAGCGAACTGATTCGGATCTCGGCTCAAGAAGTGACAATCTTGAGTTTGTGAGAACCCTGTTAGCATATTGGCCAAAC_-_ATGGCAGAAGATGACAATGCCTCACGTTATGTGAAGCTTACCAAGGAGCACGATGCTGCCATTGAAxxxxxxAGCTATGAACCACCTGCTGATGAACATTGGACAACAGGAATCTGTGGTTGTGCTGAAGATCCTGAGAGTTGTTGGCGTGGCCCGTTCTGTCCATGCGTTTTGTTTGGGTACAACGTACAAAATATGAGGGATGACATACCTTGGACTGCACCATGTACTTGCCATGCAATCTTCGTTGAAGGTGGCATGGCATT

Fln Alignment:

AllPineV4_rep_c125921___MAEDDNASRYVKLTKEHDAAIEExxxxxxxxxxxxxxxxxxxxxxxxxxxxESYEPPADEHWTTGICGCAEDPESCWRGPFCPCVLFGYNVQNMRDDIPWTAPCTCHAIFVEGGMA
B8LLS3_______________MAEDDNASRYVKLTKEHDAPVEExxxxxxxxxxxxxxxxxxxxxxxxxxxxESYEPLADEPWTTGICGCAEDPESCWRGLFCPCVLFGHNVQNMRDDIPWTAPCTCHAIFVEGGMA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain