SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79229

Length: 551 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene79229
CGTCGTGACCTTGGCTGTCACTCAATTTCTCAGTTTGCTCTGGTAAGGCACAGGCATCTGGCGGAGCGCAAGGAGTAGAGGAGCATTTCTCAGTTTGCTCTGTAGGCCACAGGCATCTGGTGGAGCGCAAGGAGTAGAGGAGTGCGGAGACATCATGCCTTTCAGACGCTATGTCGAGATTGGGCGTGTAGCCCTTGTTAACTATGGGCCTGACTATGGGAAGCTTGTTGTAATTGTCGATGTTGTTGACCAGAACCGGGCATTGGTTGATGCACCGAAGATGGTGAGATCTGTCAGTGAAAGCCTTTTAAAGTTCATTTGAGATCTCAAGATTGACATTCCTAGAGTACCAAAGAAGAAAGTTTTAATTGATGCTATGGAGTCTGCAGAAGTTCAAAAGAGATGGGAAAATAGTTCATGGGGTCGAAAATTAATCGTGCAAAAGCGAAGAGCTGAATTGAACGATTTTGAGAGATTTAAAATCATGCTGGCTAAAATCAAGAGGGGAACACTAATCAAGCGCGAGCTTTCAAAGTTGAAAAGGAGAACCC

Ace file of the UniGene sp_v2.0_unigene79229 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[J] COG2163 Ribosomal protein L14E/L6E/L27E	-	-	8.0e-18	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	60s ribosomal protein	-	-	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L14	IPR002784	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRN0

Fln msg: STOP codon was not found. Distance to subject end: 2 aas,

Fln protein: MPFRRYVEIGRVALVNYGPDYGKLVVIVDVVDQNRALVDAPKMVRSVSESLLKFI*DLKIDIPRVPKKKVLIDAMESAEVQKRWENSSWGRKLIVQKRRAELNDFERFKIMLAKIKRGTLIKRELSKLKRRT

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTCAGTTTGCTCTGGTAAGGCACAGGCATCTGGCGGAGCGCAAGGAGTAGAGGAGCATTTCTCAGTTTGCTCTGTAGGCCACAGGCATCTGGTGGAGCGCAAGGAGTAGAGGAGTGCGGAGACATC_-_ATGCCTTTCAGACGCTATGTCGAGATTGGGCGTGTAGCCCTTGTTAACTATGGGCCTGACTATGGGAAGCTTGTTGTAATTGTCGATGTTGTTGACCAGAACCGGGCATTGGTTGATGCACCGAAGATGGTGAGATCTGTCAGTGAAAGCCTTTTAAAGTTCATTTGAGATCTCAAGATTGACATTCCTAGAGTACCAAAGAAGAAAGTTTTAATTGATGCTATGGAGTCTGCAGAAGTTCAAAAGAGATGGGAAAATAGTTCATGGGGTCGAAAATTAATCGTGCAAAAGCGAAGAGCTGAATTGAACGATTTTGAGAGATTTAAAATCATGCTGGCTAAAATCAAGAGGGGAACACTAATCAAGCGCGAGCTTTCAAAGTTGAAAAGGAGAACCC

Fln Alignment:

AllPineV4_rep_c125135___MPFRRYVEIGRVALVNYGPDYGKLVVIVDVVDQNRALVDAPKMVRSVSESLLKFI*DLKIDIPRVPKKKVLIDAMESAEVQKRWENSSWGRKLIVQKRRAELNDFERFKIMLAKIKRGTLIKRELSKLKR
B8LRN0_______________MPFRRYVEIGRVALVNYGPDYGKLVVIVDVVDQNRALVDAPKMVRSQMNFKRLSLTDIKIDIPRVPKKKVLTEAMEAAEVQKRWENSSWGRKLIVQKRRAELNDFERFKVMLAKIKRGALIKREISKLKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain