SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79196

Length: 498 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene79196
AGTTCTGGAGTTTTCAGGTATTGAGATTGATTATTTGTAGCCTTGCTTGACTTCGAATCCCATTGGGCTGTGTTAGATTTCGGTAAGAGAGTTTACAATGGCGCCCATAGCAGTCGGTGATAAGATTCCAGATGGTGTTCTGGCCTATTTTGATGAAGAGAGCAAGCTCCAGCAAGTTTCCGTACACTCTTTGGCCGCCGGGAAGAAGATTATTCTCTTCGGCGTCCCGGGGGCTTTCACTCCCACTTGCAGTATGAAGCATGTTCCGGGGTTTGTTGAGAAGGCGGAGGAGTTGAAAGGAAAAGGGATCGACGAAATTATCTGCGTAAGTGCTATAGAGGGTACTATTCCTTCAAAGTTGTCTAGTGTGGTAACAGGGGTGTCAACGGCTTATTAGTGTCTAGGGGGATGGATGGGATCTTGATAGGTGGCCTGGAATGTGGTCATCGTCAACAGTTGATTGTAAGCTTATTGGTGCTGGGAATTGAACTTTGGTAG

Ace file of the UniGene sp_v2.0_unigene79196

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxiredoxin n=4 Tax=Papilionoideae RepID=B3GV28_PEA	-	-	4.0e-32	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	type ii peroxiredoxin	-	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	F-box associated domain, type 1	IPR006527	-	-
Sma3		IPR012335	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Redoxin	IPR013740	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3		IPR017936	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNX1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 30 aas, your sequence is shorter than subject: 100 - 164

Fln protein: MAPIAVGDKIPDGVLAYFDEESKLQQVSVHSLAAGKKIILFGVPGAFTPTCSMKHVPGFVEKAEELKGKGIDEIICVSAIEGTIPSKLSSVVTGVSTAY*

Protein Length: 101

Fln nts: AGTTCTGGAGTTTTCAGGTATTGAGATTGATTATTTGTAGCCTTGCTTGACTTCGAATCCCATTGGGCTGTGTTAGATTTCGGTAAGAGAGTTTACA_-_ATGGCGCCCATAGCAGTCGGTGATAAGATTCCAGATGGTGTTCTGGCCTATTTTGATGAAGAGAGCAAGCTCCAGCAAGTTTCCGTACACTCTTTGGCCGCCGGGAAGAAGATTATTCTCTTCGGCGTCCCGGGGGCTTTCACTCCCACTTGCAGTATGAAGCATGTTCCGGGGTTTGTTGAGAAGGCGGAGGAGTTGAAAGGAAAAGGGATCGACGAAATTATCTGCGTAAGTGCTATAGAGGGTACTATTCCTTCAAAGTTGTCTAGTGTGGTAACAGGGGTGTCAACGGCTTATTAGTGTCTAGGGGGATGGATGGGATCTTGATAGGTGGCCTGGAATGTGGTCATCGTCAACAGTTGATTGTAAGCTTATTGGTGCTGGGAATTGAACTTTGGTAG

Fln Alignment:

AllPineV4_rep_c124949___MAPIAVGDKIPDGVLAYFDEESKLQQVSVHSLAAGKKIILFGVPGAFTPTCSMKHVPGFVEKAEELKGKGIDEIICVSAIEGTIPSKLSSVVT
A9NNX1_______________MAPIAVGDKIPDGVLAYFDEENKLQQVSAHSLAAGKKIILFGVPGAFTPTCSMQHVPGFVEKAEELKGKGIDEIICISVNDPFVMKEWSKTYT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain