SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
KEGGs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79182

Length: 392 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene79182
AAATGGGCGTAAAGGGGTTTGTGGAAGGAGGGATTGCCTCGGTCGTGGCAGGATGTAGTACACACCCTCTGGATCTGATAAAGGTGCGCATGCAGCTACAAGGCGAGCAAACTGTTCGCCCCACATTCGCCTTTGCTAATGTGGACGCTGGTTACCCGGTGGCGGAATTAGCCCACCGGAATAGGGTGGGGCCAATCTCTGTGGGAATCCGCGTGGTTCAGACGGAGGGGGTATCTGCGCTCTTTTCCGGTGTGTCTGCAACCATGCTCCGGAGCCCTTGTGAGCAATACCCATGACACTTTGTCAAGGTTAGATGTATCTTGGTGCCGCAACTTGACAGATGAGGCTCTAGGGCTGCTGGCAGATTCCTGTTCTCTTCTTAGAGAGTCTTA

Ace file of the UniGene sp_v2.0_unigene79182

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial dicarboxylate carrier protein, putative n=1 Tax=Ricinus communis RepID=B9SXH6_RICCO	-	-	8.0e-27	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	mitochondrial dicarboxylate carrier	-	-	1.4013e-45	76%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial brown fat uncoupling protein	IPR002030	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSC7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 185 aas, atg_distance in limit (1-15): atg_distance = 1, your sequence is shorter than subject: 98 - 314

Fln protein: MGVKGFVEGGIASVVAGCSTHPLDLIKVRMQLQGEQTVRPTFAFANVDAGYPVAELAHRNRVGPISVGIRVVQTEGVSALFSGVSATMLRSPCEQYP*

Protein Length: 99

Fln nts: AA_-_ATGGGCGTAAAGGGGTTTGTGGAAGGAGGGATTGCCTCGGTCGTGGCAGGATGTAGTACACACCCTCTGGATCTGATAAAGGTGCGCATGCAGCTACAAGGCGAGCAAACTGTTCGCCCCACATTCGCCTTTGCTAATGTGGACGCTGGTTACCCGGTGGCGGAATTAGCCCACCGGAATAGGGTGGGGCCAATCTCTGTGGGAATCCGCGTGGTTCAGACGGAGGGGGTATCTGCGCTCTTTTCCGGTGTGTCTGCAACCATGCTCCGGAGCCCTTGTGAGCAATACCCATGACACTTTGTCAAGGTTAGATGTATCTTGGTGCCGCAACTTGACAGATGAGGCTCTAGGGCTGCTGGCAGATTCCTGTTCTCTTCTTAGAGAGTCTTA

Fln Alignment:

AllPineV4_rep_c124869___MGVKGFVEGGIASVVAGCSTHPLDLIKVRMQLQGEQTVRPTFAFANVDAGYPVAELAHRNRVGPISVGIRVVQTEGVSALFSGVSATMLR
C0PSC7_______________MGVKGFVEGGIASVVAGCSTHPLDLIKVRMQLQGEQNVRPAFAFANVGAGCPAAELAHQ-KVGPISVGIRVVQTEGVSALFSGVSATMLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain