SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79089

Length: 527 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene79089
GATAATCCACTCATTGCATTAGAATATGTTTGCAATTCAAGAGAAATAAAAGATAAACAATATCAACTGCTCAAAAGCGAAAGAACACCTATCATAACTTGAATTCTGCTCAAAAGCGAAAGAACACCTATCATAACTTGAATTCTGATGCAAATCGAAATTTGCCAAAAACTTGGACGGAAATATAATAGGCAATCCCCAATTACAGCATCTCTGATGCTGCTTGTCTCTGTTAGCTCAGATCTTCCACAGATCTCACACAGATCCATTGGTATATAACACTACTTCTGAGTTCTAAGGGTTCACCCAGATATCGGCATTTCTAGCAAGGCCATGGGGATAATGAACAGCTTCATCAACGATATCTTTGAGAAGTTAGCGAGTGAGTCATCGAAACTTGCCCGCTACAACAAGAAGCCCACCATTACATCTCGTGAGATTCAGACCGCTGTAAGGCTGGCGCTTCCAGGAGAGCTCGCCAAGCACGCCGTCTCGGAGGGTACCAAGGCGGTGACTAAGTTCAACCA

Ace file of the UniGene sp_v2.0_unigene79089 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH	-	-	2.0e-32	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	histone h2b	-	-	1.93519e-42	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	1.93519e-42	99%

Source	InterPros	Term	Type	Identity
Sma3	Histone H2B	IPR000558	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXC7

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 78 - 135

Fln protein: VLRVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLALPGELAKHAVSEGTKAVTKFN

Protein Length: 79

Fln nts: GATAATCCACTCATTGCATTAGAATATGTTTGCAATTCAAGAGAAATAAAAGATAAACAATATCAACTGCTCAAAAGCGAAAGAACACCTATCATAACTTGAATTCTGCTCAAAAGCGAAAGAACACCTATCATAACTTGAATTCTGATGCAAATCGAAATTTGCCAAAAACTTGGACGGAAATATAATAGGCAATCCCCAATTACAGCATCTCTGATGCTGCTTGTCTCTGTTAGCTCAGATCTTCCACAGATCTCACACAGATCCATTGGTATATAACACTACTTCTGAGTTCTAAGGGTTCACCCAGATATCGGCATTTCTAGCAAGGCCATGGGGATAATGAACAGCTTCATCAACGATATCTTTGAGAAGTTAGCGAGTGAGTCATCGAAACTTGCCCGCTACAACAAGAAGCCCACCATTACATCTCGTGAGATTCAGACCGCTGTAAGGCTGGCGCTTCCAGGAGAGCTCGCCAAGCACGCCGTCTCGGAGGGTACCAAGGCGGTGACTAAGTTCAACCA

Fln Alignment:

AllPineV4_rep_c124413___RVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLALPGELAKHAVSEGTKAVTKF
A9NXC7_______________QVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLALPGELAKHAVSEGTKAVTKF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
341	33			66	0.997457
342	66			33	0.997456
344	66	33			0.997453
345			33	66	0.997453
348		66	33		0.997453
349	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain