SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79054

Length: 379 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene79054
AAGACCTTGACCTTCATACTAGGGTTTTAGAGGAGAGGAGGGATACAAGTAGGGTTTCAATTCACTCTGATGCAAAACCACATAACAGTTCTTACACTCTGTTTCGTCCAGTGGTCTGTTTCGTTCAGTGGTCGCCGACTTCGTGTTAGGAGTTTGCAGGTTCGAGCCATGGCGACGGCGTGTACAGTCAAAGATGTCTCCCCGCACGAGTTCGTGACAGCTTATGCTGCACATCTTAAACGATCCGGCAAGATTGAGCTTCCACACTGGACGGACCTTGTAAAGACAGCCACTTTCAAGGAACTCGCTCCATATGATCCTGACTGGTACTATGTTAGAGCAGCTTCAATGGCAAAACAAGGAAAATCTATTTGAGAAA

Ace file of the UniGene sp_v2.0_unigene79054 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S19 n=1 Tax=Elaeis guineensis RepID=B3TLL5_ELAGV	-	-	6.0e-25	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	40s ribosomal protein s19	-	-	5.23111e-39	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	5.23111e-39	92%
Blast2go	vacuole	GO:0005773	Cellular Component	5.23111e-39	92%
Blast2go	cell wall	GO:0005618	Cellular Component	5.23111e-39	92%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	5.23111e-39	92%
Blast2go	membrane	GO:0016020	Cellular Component	5.23111e-39	92%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S19e	IPR001266	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Ribosomal protein S19e, conserved site	IPR018277	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKW9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 74 aas, your sequence is shorter than subject: 102 - 144

Fln protein: MQNHITVLTLCFVQWSVSFSGRRLRVRSLQVRAMATACTVKDVSPHEFVTAYAAHLKRSGKIELPHWTDLVKTATFKELAPYDPDWYYVRAASMAKQGKSI*

Protein Length: 103

Fln nts: AAGACCTTGACCTTCATACTAGGGTTTTAGAGGAGAGGAGGGATACAAGTAGGGTTTCAATTCACTCTG_-_ATGCAAAACCACATAACAGTTCTTACACTCTGTTTCGTCCAGTGGTCTGTTTCGTTCAGTGGTCGCCGACTTCGTGTTAGGAGTTTGCAGGTTCGAGCCATGGCGACGGCGTGTACAGTCAAAGATGTCTCCCCGCACGAGTTCGTGACAGCTTATGCTGCACATCTTAAACGATCCGGCAAGATTGAGCTTCCACACTGGACGGACCTTGTAAAGACAGCCACTTTCAAGGAACTCGCTCCATATGATCCTGACTGGTACTATGTTAGAGCAGCTTCAATGGCAAAACAAGGAAAATCTATTTGAGAAA

Fln Alignment:

AllPineV4_rep_c124276___MATACTVKDVSPHEFVTAYAAHLKRSGKIELPHWTDLVKTATFKELAPYDPDWYYVRAASMAKQ
A9NKW9_______________MATACTVKDVSPHEFVTAYAAHLKRSGKIELPHWTDLVKTATFKELAPYDPDWYYVRAASMARK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
27		33	66		0.997476
29		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain