SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79015

Length: 363 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene79015
CGTCGTGACCTTGGCTGTCACTCATTTAACTCAGGTGGCAGCAAAGTGTGTTCCCAAGGGCCTGCACTGTCTGTCCATGTGATTGGCCATAGATTATTACTTTCTTCCTCTTGAAAAGCGATAATTTCCTAAAAAGGACAAGTAGGAGGATCCGACTCTTTATCACTATGTATCTGTGGCTGTGAATTCAACTGTCATGAATGCTAAGGAATCTGAGAAACATGTATTTCATCTCATCACAGACAAGTTAAATTTTGGGGCCATGAAAATGTGGTTTTTACTTAATCCCCCAGGGAAAGCTGTGATACATGTAGAAAATGTAGATGATTTTTAATGGATCAATTCCTCCTATTGCCATTTCGC

Ace file of the UniGene sp_v2.0_unigene79015

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase n=1 Tax=Populus trichocarpa RepID=B9GPT1_POPTR	-	-	3.9937e-43	69%
FL-Next	sp=Alpha-1,4-galacturonosyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%
Blast2go	alpha- -galacturonosyltransferase 1-like	-	-	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LE59

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 232 aas, your sequence is shorter than subject: 111 - 673

Fln protein: VVTLAVTHLTQVAAKCVPKGLHCLSM*LAIDYYFLPLEKR*FPKKDK*EDPTLYHYVSVAVNSTVMNAKESEKHVFHLITDKLNFGAMKMWFLLNPPGKAVIHVENVDDF*

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTAACTCAGGTGGCAGCAAAGTGTGTTCCCAAGGGCCTGCACTGTCTGTCCATGTGATTGGCCATAGATTATTACTTTCTTCCTCTTGAAAAGCGATAATTTCCTAAAAAGGACAAGTAGGAGGATCCGACTCTTTATCACTATGTATCTGTGGCTGTGAATTCAACTGTCATGAATGCTAAGGAATCTGAGAAACATGTATTTCATCTCATCACAGACAAGTTAAATTTTGGGGCCATGAAAATGTGGTTTTTACTTAATCCCCCAGGGAAAGCTGTGATACATGTAGAAAATGTAGATGATTTTTAATGGATCAATTCCTCCTATTGCCATTTCGC

Fln Alignment:

AllPineV4_rep_c124069___THLTQVAAKCVPKGLHCLSM*LAIDYYFLPLEKR*FPKKDK*EDPTLYHYV---------SVAVNSTVMNAKESEKHVFHLITDKLNFGAMKMWFLLNPPGKAVIHVENVDDF*WINSSYC
Q9LE59_______________TFLAQLAAKTIPNPIHCLSMRLTIDYYLLSPEKRKFPRSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDEFKWLNSSYC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
36		33	66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain