SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78993

Length: 760 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene78993

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin n=6 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	91%
FL-Next	tr=Expansin; Pinus taeda (Loblolly pine).	-	-	91%
Blast2go	alpha-expansin 8	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
303		33		66	0.997452
305	33		66		0.997452
306	33		66		0.997452
339	66			33	0.997452
342	66	33			0.997452
348		33		66	0.997452
357		33	66		0.997452
372		25	75		0.996473
374			75	25	0.996473
375	75	25			0.996473
381	75	25			0.996473
384		75	25		0.996473
388			25	75	0.996473
420	25		75		0.996473
426		75		25	0.996473
447	75			25	0.996473
450	25		75		0.996474
476	25		75		0.996473
480	25		75		0.996476
487	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain