SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78904

Length: 508 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene78904
CGTCGTGACCTTGGCTGTCACTCAGGAAGAAATGGCTCATATGTCTAAAGTTCCATATGCATCAGTAGTTGGAAGTTTAATGTATGCAATGGTCTGCACAAGGCCTGATATTGCACATGCAGTGGGATTGTAAGCAGGTACATGAACAATCCAGGAAAGGAACATTGGATGGCGGTGAAGTGGATTCTCAGGTATTTGAGAGGTACCACAAATCTAGCGTTATGCTTTGGTGGTTCAAACATTTCTCTACAAGGATATGTTGATGCAGATATAGCAGGTGATAGAGATAACGGGAGGAGCACAACAAGGTATGTGTTTACTGTAGGTGGAAGAAATGTCAGTTGGGTTTCAAAAATCCAAAGTGTTGTTGCACTTTCAACAACAGAAGTAGAGTATGTTGTTTCTGTAGAGGCTAGTAAAGAAATGATTTGGTTACAAAGGTTTTTGGATGAAATGGGCAAGAAGCAAGAGTTGGGCAGGTTATATAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v2.0_unigene78904

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	85%
Blast2go	hypothetical protein VITISV_022356 [Vitis vinifera]	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Protein of unknown function DUF295	IPR005174	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Overlapping hits, possible frame ERROR between 127 and 124, Distance to subject end: 17 aas, your sequence is shorter than subject: 169 - 542

Fln protein: VVTLAVTQEEMAHMSKVPYASVVGSLMYAMVCTRPDIAHAxxxVSRYMNNPGKEHWMAVKWILRYLRGTTNLALCFGGSNISLQGYVDADIAGDRDNGRSTTRYVFTVGGRNVSWVSKIQSVVALSTTEVEYVVSVEASKEMIWLQRFLDEMGKKQELGRLYSDSQGHD

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAAGAAATGGCTCATATGTCTAAAGTTCCATATGCATCAGTAGTTGGAAGTTTAATGTATGCAATGGTCTGCACAAGGCCTGATATTGCACATGCAxxxxxxxxxGTAAGCAGGTACATGAACAATCCAGGAAAGGAACATTGGATGGCGGTGAAGTGGATTCTCAGGTATTTGAGAGGTACCACAAATCTAGCGTTATGCTTTGGTGGTTCAAACATTTCTCTACAAGGATATGTTGATGCAGATATAGCAGGTGATAGAGATAACGGGAGGAGCACAACAAGGTATGTGTTTACTGTAGGTGGAAGAAATGTCAGTTGGGTTTCAAAAATCCAAAGTGTTGTTGCACTTTCAACAACAGAAGTAGAGTATGTTGTTTCTGTAGAGGCTAGTAAAGAAATGATTTGGTTACAAAGGTTTTTGGATGAAATGGGCAAGAAGCAAGAGTTGGGCAGGTTATATAGTGACAGCCAAGGTCACGACG

Fln Alignment:

AllPineV4_rep_c123507___QEEMAHMSKVPYASVVGSLMYAMVCTRPDIAHAVxIVSRYMNNPGKEHWMAVKWILRYLRGTTNLALCFGGSN-----ISLQGYVDADIAGDRDNGRSTTRYVFTVGGRNVSWVSKIQSVVALXXXXXXXXXXXXXXXXMIWLQRFLDEMGKKQELGRLYSDSQ
Q9M5J7_______________QEEEEDMSHVPYASAVGSLMYAMVCTRPDIAHAVxFLSRYMSKLGKEHWTTVKRVFRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGIGLVQQVVRLDCEIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain