SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78895

Length: 414 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene78895
CGTCGTGACCTTGGTTGTCACTCATCCTCTTTACCTTGCTCGATTCCATCAAAGAATTTAAGAGTGTTACATATAGAGGGGCGACGCCTGAAAAGACTCTGGCGACATGAATCTCAGGCACCTCTGCAATTGAGAGAGTTGCATATTGATGCTCCCCTTTCAAAGGTTCCAGAGTCCATTGGAAAACTGAAGCACCTTGAAAAAGATTTTCTGAACACTCGTTATCTTAAAACTATTTCAAATGAATTTTGTAACTTATCAGGACTCCAAAGTCTTCACTTGAGGTTCGGCCAACTGCAGACGCTACCAGAGTCTATTGGGAACCTGACGGGCTTCCAAAGTCTTCACTTAAGTTGGTTCCACAATCTGCAGACGCTCCCAAACTCGCTTGGGAACCTGACGGGCCTCCAACGT

Ace file of the UniGene sp_v2.0_unigene78895 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	6.0e-27	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	cytoplasmic membrane protein	-	-	7.82485e-42	59%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 94 aas, your sequence is shorter than subject: 138 - 1071

Fln protein: RRDLGCHSSSLPCSIPSKNLRVLHIEGRRLKRLWRHESQAPLQLRELHIDAPLSKVPESIGKLKHLEKDFLNTRYLKTISNEFCNLSGLQSLHLRFGQLQTLPESIGNLTGFQSLHLSWFHNLQTLPNSLGNLTGLQR

Protein Length: 139

Fln nts: CGTCGTGACCTTGGTTGTCACTCATCCTCTTTACCTTGCTCGATTCCATCAAAGAATTTAAGAGTGTTACATATAGAGGGGCGACGCCTGAAAAGACTCTGGCGACATGAATCTCAGGCACCTCTGCAATTGAGAGAGTTGCATATTGATGCTCCCCTTTCAAAGGTTCCAGAGTCCATTGGAAAACTGAAGCACCTTGAAAAAGATTTTCTGAACACTCGTTATCTTAAAACTATTTCAAATGAATTTTGTAACTTATCAGGACTCCAAAGTCTTCACTTGAGGTTCGGCCAACTGCAGACGCTACCAGAGTCTATTGGGAACCTGACGGGCTTCCAAAGTCTTCACTTAAGTTGGTTCCACAATCTGCAGACGCTCCCAAACTCGCTTGGGAACCTGACGGGCCTCCAACGT

Fln Alignment:

AllPineV4_rep_c123461___SSLPCSIPSKNLRVLHIEGRRLKRLWRHESQAPLQLRELHIDAPLSKVPESIGKLKHLEKDFLNTRYLKTISNEFCNLSGLQSLHL-RFGQLQTLPESIGNLTGFQSLHLSWFHNLQTLPNSLGNLTGLQ
C0PQE2_______________SSLPPSLPSMNLRVLHIQGKQLKTLWQHESQAPLQLRELYVNAPLSKVPESIGTLKYLEKIVLYNGSMTLLPDSVGHLTGLQTLDLIGCSTLQMLPDSVGNLTGLQKLDLSWCSTLQMLPDSVGNLTGLQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
34		33		66	0.997452
82	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain