SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78894

Length: 1096 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene78894

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cytochrome P450, family 89, subfamily A, polypeptide 5 [Arabidopsis thaliana] gb\|AAD38269.1\|AC006193_25 Putative cytochrome P450 [Arabidopsis thaliana] gb\|AAK59583.1\| putative cytochrome p450 protein [Arabidopsis thaliana] gb\|AAK93709.1\| putative cytochro	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	cytochrome p450	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	cutin biosynthetic process	GO:0010143	Biological Process	63%
Blast2go	flower development	GO:0009908	Biological Process	63%
Blast2go	mitochondrion	GO:0005739	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLH0

Fln msg: your sequence is shorter than subject: 308 - 327

Fln protein: MCFGSKPDEEAVISIQDVMREVLLNGGGLDEALAILGFFNRRRRARREEIRHRQRETLLTLINQRRDAPSPAGGAYVDTLFNLRMDGGRSLNDDELVTLSFEFITGGTDTTTTSLQWLMANLVIRQDIQMRLYDEIVGVTGKGKLADENDLQRMPYLDAVVKETLRRHPPGHFVLSHAVTRPCELAGYKVPTDASINFDVAGIGMDPGVWPSPSEFKPERFVDEGVEVDLTGTKEIKMMPFGAGRRVCPGLGMAMLHLNLIVARLVQEFTWDCNPGETVDLSETHQFTTVMKYPLQALIKERGNGNN*

Protein Length: 309

Fln nts: GGAACGGTGAGCGTGGTGGAGCAGCTTCGAAACGCGGTCTTTTGTATCCTCCTGTGG_-_ATGTGCTTCGGCAGCAAACCGGACGAGGAGGCGGTGATATCCATCCAGGACGTCATGCGAGAGGTCCTCCTCAACGGCGGAGGTCTGGACGAAGCCTTAGCCATTCTGGGGTTCTTCAACCGGCGGCGCCGGGCGCGGAGGGAGGAGATCCGTCATAGGCAGCGAGAAACTCTGCTCACACTCATAAACCAGCGCCGTGATGCACCCTCTCCGGCCGGCGGTGCGTACGTGGACACGCTGTTCAATCTGAGAATGGACGGCGGCCGCAGCCTCAACGACGACGAGCTCGTTACTCTCTCCTTCGAATTCATCACCGGCGGCACCGATACGACCACAACGTCTCTGCAGTGGTTGATGGCGAATCTGGTGATCCGTCAAGATATACAGATGAGATTATACGATGAGATCGTCGGCGTCACTGGCAAGGGGAAACTGGCGGATGAAAACGACCTGCAGCGGATGCCTTATCTCGATGCCGTGGTGAAGGAAACCCTGAGACGCCACCCTCCCGGGCACTTTGTCCTCAGCCACGCCGTCACCCGACCCTGCGAACTTGCCGGCTACAAGGTCCCGACTGACGCATCCATCAATTTCGACGTGGCGGGCATAGGGATGGATCCCGGAGTGTGGCCGAGCCCGTCGGAATTCAAGCCAGAGCGGTTTGTCGATGAAGGTGTGGAAGTGGATTTGACAGGGACAAAGGAGATAAAGATGATGCCATTTGGCGCAGGGCGGAGGGTTTGTCCGGGTTTAGGGATGGCTATGCTCCATTTAAACCTCATCGTTGCCCGACTTGTTCAGGAATTCACGTGGGATTGCAATCCCGGGGAGACGGTTGATCTGTCCGAGACGCACCAATTCACTACGGTGATGAAATACCCTCTGCAGGCGCTCATAAAGGAAAGGGGGAACGGAAATAATTAG___AGTGGTGGAAGCTTACGAGAGGTCACAGGTTCGATACTTCGCGCATTCTGTACTGTAATTGAATTAAAATACTTGCTTGTGTGAACATTTTTCTCTTTAATGGATGTTGGTTTAG

Fln Alignment:

AllPineV4_rep_c123460___TLLTLINQRR---------DAPSPAGG-AYVDTLFNLRMDGGRSL-NDDELVTLSFEFIXXXXXXXXXSLQWLMANLVIRQDIQMRLYDEIVGVTGKGKLADENDLQRMPYLDAVVKETLRRHPPGHFVLSHAVTRPCELAGYKVPTDASINFDVAGIGMDPGVWPSPSEFKPERFVDEGVEVDLTGTKEIKMMPFGAGRRVCPGLGMAMLHLNLIVARLVQEFTWDCNPGETVDLSETHQFTTVMKYPLQALIKER
B8LLH0_______________SILPLVNTRRAVLKAGAHTQAGSPDGAHAYIDSLMNLELPEGRGKPTDEELVTLCSELLTAGTDTTSTALEWAMLRMVMHQDIQETLYQEICDVVGDRKV-EGKDIENLPYLNAVVKETLRRHPPGHFVLSHAVTQDCQLRGYDIPYKANVEFYTAWMSFDPKIWPDPMTFNPRRFLDPGNEVDITGNKQVKMMPFGVGRRICPALGLGTLHINLILARMVQEFHWSCRDGETPDISEKFAFTVIMKNPLQASIKKR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
632		66		33	0.997452
640	33			66	0.997452
641		66		33	0.997452
662		33	66		0.997452
704	75	25			0.996473
705		25		75	0.996473
708	75			25	0.996474
709	75		25		0.996474
712		75		25	0.996474
713	75		25		0.996474
714			75	25	0.996474
715	75	25			0.996474
716	25		75		0.996474
718			66	33	0.997452
719		50	50		1.0
720	25			75	0.99649
725		50		25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain