SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78853

Length: 454 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene78853
CGTCGTGACCTTGGCTGTCACTCATTCAAACCACGTCACCTCTCGCCTTGGGCGTCGGCTATCAGAAAAGGCCTCCTGGAAGTAGGGGTTCTTCCATACAATGGATACACGTTGGATCATTTGGATGGAACCAAGATCAGCGCCTCCATGTTTGACAACAATGGCAAAAGACACACAGCAGCAGATCTTCTTAGGTCAGCCAATCCCGACAATATCGTAGTCCTTCTCAATGCTACCGTCAGCAGGATTCTGTTCAATTGTCCAGAAGAGGAAAAGAAGGATGGCTCCTCTCCGAAGCCGAGGGCAAGTGGTGTTGAATTCATGGACGGCCATGGACACTCTTATCAAGTTTTTCTGAATGAATCATCACGTTCCAGCGAGGTAGTCCTTAGCGCAGGAGCCCTAGGCAGCCCCCAGCTGCTGATGTTGAGCGGAATTGGGCCATCTCAACTTC

Ace file of the UniGene sp_v2.0_unigene78853

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein HOTHEAD n=1 Tax=Zea mays RepID=B6SW64_MAIZE	-	-	3.0e-35	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	protein hothead-like	-	-	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Glucose-methanol-choline oxidoreductase, N-terminal	IPR000172	-	-
Sma3	Glucose-methanol-choline oxidoreductase, C-terminal	IPR007867	-	-
Sma3	Glucose-methanol-choline oxidoreductase	IPR012132	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXU5

Fln msg: Distance to subject end: 223 aas, your sequence is shorter than subject: 151 - 558

Fln protein: RRDLGCHSFKPRHLSPWASAIRKGLLEVGVLPYNGYTLDHLDGTKISASMFDNNGKRHTAADLLRSANPDNIVVLLNATVSRILFNCPEEEKKDGSSPKPRASGVEFMDGHGHSYQVFLNESSRSSEVVLSAGALGSPQLLMLSGIGPSQL

Protein Length: 152

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCAAACCACGTCACCTCTCGCCTTGGGCGTCGGCTATCAGAAAAGGCCTCCTGGAAGTAGGGGTTCTTCCATACAATGGATACACGTTGGATCATTTGGATGGAACCAAGATCAGCGCCTCCATGTTTGACAACAATGGCAAAAGACACACAGCAGCAGATCTTCTTAGGTCAGCCAATCCCGACAATATCGTAGTCCTTCTCAATGCTACCGTCAGCAGGATTCTGTTCAATTGTCCAGAAGAGGAAAAGAAGGATGGCTCCTCTCCGAAGCCGAGGGCAAGTGGTGTTGAATTCATGGACGGCCATGGACACTCTTATCAAGTTTTTCTGAATGAATCATCACGTTCCAGCGAGGTAGTCCTTAGCGCAGGAGCCCTAGGCAGCCCCCAGCTGCTGATGTTGAGCGGAATTGGGCCATCTCAACTTC

Fln Alignment:

AllPineV4_c123265___HSFKPRHLSPWASAIRKGLLEVGVLPYNGYTLDHLDGTKISASMFDNNGKRHTAADLLRSANPDNIVVLLNATVSRILFNCPEEEKKDGSSPKPRASGVEFMDGHGHSYQVFLNESSRSS-------------------EVVLSAGALGSPQLLMLSGIGPSQ
A9NXU5_______________NAFKPQHLSPWSSAIRDGLVEAGVLPYNGYTLDHLDGTKISASIFDSKGKRHTAADLLKSANPDNIVVLLNATVSRVLFNSPAEETKDGSSQKPRASGVEFMDGHGRSYQVFLNESSRSSKDFDQNQSKNILEEKGKGPEVILTAGALGSPQLLLLSGIGPSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain