SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78813

Length: 570 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene78813
CATTGAAGCTCTTGGAACCCCCCTCACAAACAAATACTCCGAGGGCATGCCTGGCAACAGATACTACGGTGGTAACGAATACATAGATCTCATTGAAAATCTGTGCAGCCCTACTCTGGGAGCCCCGCTAACTTCGCAGCCTACACAGCCCTGCTGAACCCACATGACCGCATCATGGGGCTGGATTTGCCTTCTGGTGGCCATCTCACTCATGGATATTACACCTCTGGTGGCAAGAAGATTTCTGCTACATCTATTTACTTTGAGAGTTTGCCTTACAAGGTCAGCCAGGAGACTGGGTTCATTGATTATGACAAGCTGGAGGAGAAAGCCTTGGATTTCAGGCCTAAGCTTATTATATGTGGAGGAAGTGCTTATCCCAGGGACTGGGATTATGCTAGGTTCCGTTCCATTGCTGACAAATGTGGTGCCATGCTCTTATGTGATATGGCTCTTAAGCAGGTTATGACTCCTGGTTTTAAGGCCTATGCCAAGCAGGTCAAGGCAAATGCGGTTGCTGTTGGTAACTACTTGATGAACAAGGGATACAAGCTTGTTACAAGTGGGACA

Ace file of the UniGene sp_v2.0_unigene78813 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine hydroxymethyltransferase n=2 Tax=Picea sitchensis RepID=B8LLP6_PICSI	-	-	99%
FL-Next	sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	serine hydroxymethyltransferase	-	-	96%

Source	InterPros	Term	Type	Identity
Sma3	Serine hydroxymethyltransferase	IPR001085	-	-
Sma3	Cytochrome c domain	IPR009056	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLP6

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 129 aas, your sequence is shorter than subject: 191 - 470

Fln protein: IEALGTPLTNKYSEGMPGNRYYGGNEYIDLIExxxxPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCxxxxLKQVMTPGFKAYAKQVKANAVAVGNYLMNKGYKLVTSGT

Protein Length: 192

Fln nts: CATTGAAGCTCTTGGAACCCCCCTCACAAACAAATACTCCGAGGGCATGCCTGGCAACAGATACTACGGTGGTAACGAATACATAGATCTCATTGAAxxxxxxxxxxxxCCCTACTCTGGGAGCCCCGCTAACTTCGCAGCCTACACAGCCCTGCTGAACCCACATGACCGCATCATGGGGCTGGATTTGCCTTCTGGTGGCCATCTCACTCATGGATATTACACCTCTGGTGGCAAGAAGATTTCTGCTACATCTATTTACTTTGAGAGTTTGCCTTACAAGGTCAGCCAGGAGACTGGGTTCATTGATTATGACAAGCTGGAGGAGAAAGCCTTGGATTTCAGGCCTAAGCTTATTATATGTGGAGGAAGTGCTTATCCCAGGGACTGGGATTATGCTAGGTTCCGTTCCATTGCTGACAAATGTGGTGCCATGCTCTTATGTGAxxxxxxxxxTCTTAAGCAGGTTATGACTCCTGGTTTTAAGGCCTATGCCAAGCAGGTCAAGGCAAATGCGGTTGCTGTTGGTAACTACTTGATGAACAAGGGATACAAGCTTGTTACAAGTGGGACA

Fln Alignment:

AllPineV4_rep_c123021___IEALGTPLTNKYSEGMPGNRYYGGNEYIDLIENLCxxxxxxxxxxxxxxxxxSVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCDMAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMALKQVMTPGFKAYAKQVKANAVAVGNYLMNKGYKLVTSGT
B8LLP6_______________IEALGTPLTNKYSEGMPGNRYYGGNEFIDLIENLCxxxxxxxxxxxxxxxxxNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCDMAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVALKQVMTPGFKAYAKQVKANAVAVGNYLMNKGYKLVTSGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain