SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78680

Length: 789 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene78680

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phytochrome A-like protein (Fragment) n=1 Tax=Picea sitchensis RepID=E0Z8K8_PICSI	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	phytochrome a-like protein	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Anthranilate phosphoribosyltransferase.	EC:2.4.2.18	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	85%
Blast2go	Biosynthesis of phenylpropanoids	01061	85%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	85%
Blast2go	Biosynthesis of plant hormones	01070	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	photomorphogenesis	GO:0009640	Biological Process	85%
Blast2go	signal transduction	GO:0007165	Biological Process	85%
Blast2go	tryptophan biosynthetic process	GO:0000162	Biological Process	85%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	anthranilate phosphoribosyltransferase activity	GO:0004048	Molecular Function	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
231			16	83	0.994513
232	83		16		0.994513
268		20		80	0.995493
340		40		60	1.0
418			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain