SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78648

Length: 510 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene78648
CGTCGTGACCTTGGCTGTCACTCATTTTATGTTTGTTTAAGATCCAACCATCGAACCCCGCTAACCCTGTTTTCTACAGTTTCACAATCATGCCGATGGCTCCAGTGGTGGACGCTGCGTATCTCAAGTCCATTGACAAGGCACGCCGAGACCTGCGGGCTCTCATTGCTGAAAAGAATTGCGCGCCCATCATGCTTCGTCTCGCATGGCATGATGCAGGCACTTATGATGCAAAAACGAAGACGGGTGGGGCAAATGGTTCCATTAGAAACGAGGAGGAACTCAATCACAGTGCAAATAATGGGTTGAAAATTGCACTTGCATTGTGTGAACCAATCAAGGCAAAGTACCCAAATATTACTTATGCAGACCTTTATCAGCTGGCTGGGGGAGTGGGACGTCGAGTAAGGGTGGGAAGTCAGATTAATAGAGCATCGGTCGTGCTGAAGGTCTGTCTCATGATGTACATTCATATTTAATATACATACTTTGCAATTCATCACATTGTAT

Ace file of the UniGene sp_v2.0_unigene78648 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ascorbate peroxidase n=1 Tax=Zantedeschia aethiopica RepID=Q9XGS8_ZANAE	-	-	1.0e-39	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	l-ascorbate peroxidase	-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	peroxisome	GO:0005777	Cellular Component	87%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant ascorbate peroxidase	IPR002207	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPC2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 152 aas, your sequence is shorter than subject: 130 - 292

Fln protein: MPMAPVVDAAYLKSIDKARRDLRALIAEKNCAPIMLRLAWHDAGTYDAKTKTGGANGSIRNEEELNHSANNGLKIALALCEPIKAKYPNITYADLYQLAGGVGRRVRVGSQINRASVVLKVCLMMYIHI*

Protein Length: 131

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTATGTTTGTTTAAGATCCAACCATCGAACCCCGCTAACCCTGTTTTCTACAGTTTCACAATC_-_ATGCCGATGGCTCCAGTGGTGGACGCTGCGTATCTCAAGTCCATTGACAAGGCACGCCGAGACCTGCGGGCTCTCATTGCTGAAAAGAATTGCGCGCCCATCATGCTTCGTCTCGCATGGCATGATGCAGGCACTTATGATGCAAAAACGAAGACGGGTGGGGCAAATGGTTCCATTAGAAACGAGGAGGAACTCAATCACAGTGCAAATAATGGGTTGAAAATTGCACTTGCATTGTGTGAACCAATCAAGGCAAAGTACCCAAATATTACTTATGCAGACCTTTATCAGCTGGCTGGGGGAGTGGGACGTCGAGTAAGGGTGGGAAGTCAGATTAATAGAGCATCGGTCGTGCTGAAGGTCTGTCTCATGATGTACATTCATATTTAATATACATACTTTGCAATTCATCACATTGTAT

Fln Alignment:

AllPineV4_rep_c122107___MPMAPVVDAAYLKSIDKARRDLRALIAEKNCAPIMLRLAWHDAGTYDAKTKTGGANGSIRNEEELNHSANNGLKIALALCEPIKAKYPNITYADLYQLA
A9NPC2_______________MPMAPVVDAAYLKSIDKARRDLRALIAEKNCAPIMLRLAWHDAGTYDATTKTGGANGSIRNEEELNHGANNGLKIAIALCEPIKAKYRNITYADLYQLA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
438	10		90		0.90298
439	90		10		0.902981
458	11			88	0.991528
479	66	33			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain