SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78640

Length: 593 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene78640 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPF0197 domain containing protein	-	-	3.0e-19	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	upf0197 transmembrane protein c11orf10-like	-	-	2.96131e-15	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
340	33		66		0.997452
346	33			66	0.997452
347	33	33		33	0.997753
348		50	50		1.0
349	25	50			0.995533
350			50	50	1.0
353	40			60	1.0
354	60	40			1.0
357	75	25			0.996473
359	20		20	60	0.992564
364		75		25	0.996477
365		25		75	0.996478
369	25			75	0.996479
370		25		75	0.996479
371			25	75	0.996478
493		33		66	0.997452
494		33	66		0.997452
497		66		33	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain