SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78543

Length: 1299 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene78543 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative cysteine protease 2 n=1 Tax=Iris x hollandica RepID=Q6RCL8_IRIHO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	cysteine proteinase	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMA7

Fln msg:

Fln protein: MGPIHIISLHTPANLIVFSIMGSVSRAYLLLFYMALWALLANALDSSFGFTDEDLNSEESLRGLYDKWALQHRSTRSLNSDEHAKRFEIFKENVKYIDSVNKQDGLYKLGLNKFADLSNEEFKAMHMTTRMEKHKSLRRDRGTQSGSFMYQNSTSLPESIDWRKKGAVTPVKNQGQCGSCWAFSTVAAVESINYIKTGKLVSLSEQQLVDCSKENAGCNGGLMDYAFQYIIDNGGISTEDAYPYTAEAGECSTTKIKSKATTIVIDGFEDVPSNNEEALKKAVAHQPVSVAIEASGRDFQFYLKGVFTGKCGTELDHGVVVVGYGKTSEGINYWIVRNSWGDEWGEKGYIRMSRNIKATEGKCGIAMQASYPIMKAKALDFELYVDHISDEL*

Protein Length: 394

Fln nts: _-_ATGGGACCCATTCACATTATTTCGCTGCATACTCCTGCGAATTTGATTGTTTTTTCCATAATGGGAAGTGTTTCTAGGGCATATCTGTTACTGTTCTACATGGCCCTGTGGGCTTTATTAGCGAACGCCTTGGATTCTTCGTTTGGATTTACAGACGAGGATCTCAACTCTGAAGAAAGCCTTCGAGGGCTTTATGATAAGTGGGCACTTCAGCATCGCTCCACCAGAAGTTTGAATTCGGATGAGCATGCCAAAAGATTCGAGATATTCAAAGAGAATGTGAAATACATCGACTCTGTGAATAAGCAGGATGGTCTATACAAACTTGGATTGAATAAGTTTGCAGATCTGAGTAATGAAGAATTCAAGGCCATGCATATGACAACTAGAATGGAGAAGCACAAGAGTCTGCGCCGAGACAGAGGAACACAGAGTGGATCATTCATGTACCAAAATTCCACGAGCCTGCCAGAGTCGATTGACTGGAGGAAAAAGGGAGCGGTAACTCCTGTGAAGAACCAAGGCCAATGTGGAAGTTGTTGGGCATTTTCAACTGTAGCTGCTGTAGAGAGCATTAACTATATTAAAACAGGGAAGCTGGTTTCTTTATCAGAGCAACAGTTGGTAGATTGCAGTAAAGAGAACGCAGGTTGCAACGGAGGGCTTATGGACTATGCCTTCCAATATATAATAGATAATGGAGGCATCTCTACTGAAGATGCGTATCCTTATACTGCCGAAGCGGGCGAGTGCAGTACAACCAAGATTAAATCGAAAGCAACAACAATAGTTATTGATGGCTTCGAAGATGTCCCTTCAAACAATGAAGAAGCTCTCAAGAAAGCAGTGGCTCATCAACCAGTGTCTGTAGCCATTGAAGCAAGTGGACGAGATTTCCAATTCTATTTAAAGGGAGTATTCACTGGTAAATGTGGCACTGAACTTGATCATGGAGTTGTAGTGGTGGGGTATGGCAAGACTTCTGAAGGAATCAATTACTGGATAGTTAGAAACTCTTGGGGAGATGAATGGGGAGAAAAAGGATATATAAGAATGAGTCGAAATATTAAGGCGACTGAAGGTAAGTGTGGTATTGCCATGCAAGCATCATATCCAATCATGAAGGCTAAAGCTCTTGATTTTGAATTATATGTTGATCACATTAGTGATGAACTATAA___CTATTGTCACAACAAAAAACTGTATTCCAAGGTTAAAAAAATGAAGATTCTTTCTTCATTTATGTGTAATTAAGTTTGGCTATGATATTATATTATTGTATCGATGATAGCTACTTTTCT

Fln Alignment:

AllPineV4_rep_c121447___MGSVSRXXXXXXXXXXXXXXANALDSSFGFTDEDLNSEESLRGLYDKWALQHRSTRSLNSDEHAKRFEIFKENVKYIDSVNKQDGLYKLGLNKFADLSNEEFKAMHMTTRMEKHKSLRRDRGTQSGSFMYQNSTSLPESIDWRKKGAVTPVKNQGQCGSCWAFSTVAAVESINYIKTGKLVSLSEQQLVDCSKENAGCNGGLMDYAFQYIIDNGGISTEDAYPYTAEAGECXXXXXXXXXXXIVIDGFEDVPSNNEEALKKAVAHQPVSVAIEASGRDFQFYLKGVFTGKCGTELDHGVVVVGYGKTSEGINYWIVRNSWGDEWGEKGYIRMSRNIKATEGKCGIAMQASYPIMKAKALDFELYVDHISDEL
B8LMA7_______________MASVSKAALLLFLAALWTLSANALDSSPGFTDEELESDESLRGLYDKWALQHRSTRSLDSDEHARRFEIFKENVKHIDSVNKKDGPYKLGLNKFADLSNEEFKAMHMTTKMEKHKSLRGDRGVESGSFMYQNSKRLPASIDWRKKGAVTPVKNQGQCGSCWAFSTIASVEGINYIKTGKLVSLSEQQLVDCSKENAGCNGGLMDNAFQYIIDNGGIVTEDEYPYTAEAGECSTTKIESKSIATIIDGFEDVPANNEGALKKAVAHQPVSIAIEASGHDFQFYSTGVFTGKCGTELDHGVVVVGYGKSPEGINYWIVRNSWGPEWGEQGYIRMQRGIEATEGKCGISMQASYPTKKTQDVDIELDVDHISDEL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
360		25		75	0.996473
378	75	25			0.996473
457	20		80		0.999996
469		11	88		0.923564
471	11			88	0.923564
483	12			87	0.992554
484	12		87		0.992554
498	12		87		0.992554
588	83	16			0.994512
589		16	83		0.994512
590		16		83	0.994512
592			83	16	0.994512
865		16		83	0.994512
903	16		83		0.994512
910		66	33		1.0
1089	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain