SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78343

Length: 393 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene78343
CCGGTGCAGACGATCAGACAGAAATTTGCTTCTCGCACGACACGTCGCATCACGTCACGTCACAGATGGGCAGCAGGCAGCACTGACTTCTTTGTCTAATAGTCGTGCCTTCGAGTACTCAAGATTCTTCGATGCAGCAGCAATCCCAACGGACTCGGACAAACCAGAGAATGCAGCGTCACCGAGTCCTTGGCGACTGTGCACCGTTCACCAAGTGGAGGAGCTAAAGTCGATAATCCGGATGGGGCCAATATGGGCTGCCGGAATCCTGCTGGTGACGGCCTCCGCCCAACAGAACACGTTTTCTCTGATGCAAGCCAGGACGATGAACCGGCATTTGACAGGCACCTTTCAGATTCCCGCGGGCTCCATGTCGGTCTTCACAATCCTGGC

Ace file of the UniGene sp_v2.0_unigene78343 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative nitrite transporter [Arabidopsis thaliana] sp\|Q9SX20.1\|PTR18_ARATH RecName: Full=Probable nitrite transporter At1g68570 gb\|AAD49986.1\|AC008075_19 Similar to gb\|AF023472 peptide transporter from Hordeum vulgare and is a member of the PF\|00854 Pept	-	-	6.0e-27	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	nitrite transporter	-	-	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQS8

Fln msg: Distance to subject end: 217 aas, your sequence is shorter than subject: 130 - 649

Fln protein: RCRRSDRNLLLARHVASRHVTDGQQAALTSLSNSRAFEYSRFFDAAAIPTDSDKPENAASPSPWRLCTVHQVEELKSIIRMGPIWAAGILLVTASAQQNTFSLMQARTMNRHLTGTFQIPAGSMSVFTIL

Protein Length: 131

Fln nts: CCGGTGCAGACGATCAGACAGAAATTTGCTTCTCGCACGACACGTCGCATCACGTCACGTCACAGATGGGCAGCAGGCAGCACTGACTTCTTTGTCTAATAGTCGTGCCTTCGAGTACTCAAGATTCTTCGATGCAGCAGCAATCCCAACGGACTCGGACAAACCAGAGAATGCAGCGTCACCGAGTCCTTGGCGACTGTGCACCGTTCACCAAGTGGAGGAGCTAAAGTCGATAATCCGGATGGGGCCAATATGGGCTGCCGGAATCCTGCTGGTGACGGCCTCCGCCCAACAGAACACGTTTTCTCTGATGCAAGCCAGGACGATGAACCGGCATTTGACAGGCACCTTTCAGATTCCCGCGGGCTCCATGTCGGTCTTCACAATCCTGGC

Fln Alignment:

AllPineV4_rep_c120294___FFDAAAIPTDSDKPENAASPSPWRLCTVHQVEELKSIIRMGPIWAAGILLVTASAQQNTFSLMQARTMNRHLTGTFQIPAGSMSVFTIL
C0PQS8_______________FFDAAAILTDSDKPESARSPSPWRLCTVHQVEELKSIIRMGPIWAAGILLITASSQQSTFSLMQARTMNRHLAGSFQIPAGSMSVFTIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain