SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78304

Length: 372 nt

UniGene Fasta

>sp_v2.0_unigene78304
ATGGGCTGAAGAGCAGGCCTTAGAATTGTAGGGTAATTTGCAGGGGACAAAATGGCTTACAGAGCAGATGATGACTACGATTATCTCTTCAAGGTGGTACTGATTGGGGACTCTGGTGTGGGCAAGTCCAATCTGCTGTCGAGATTTACTAGGAACGAGTTCAGTTTGGAGTCCAAATCCACCATCGGAGTCGAGTTCGCGACTCGGAGTATAACAGTCGATGATAAGGTCATAAAAGCTCAGATTTGGGACACAGCTGGTCAAGAAAGGTGCGCTTTTCTTCTTGGTGCCCTTAAGTTGTAGGGCTATTTCTGCATCTTGATGCCAGGGTACGGTACTCTAGGGTTAGGGTTTTAGGGAAGTGTTTGATCA

Ace file of the UniGene sp_v2.0_unigene78304

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ras-related protein Rab11B n=1 Tax=Zea mays RepID=B6TX62_MAIZE	-	-	2.0e-32	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	ras-related protein raba1f-like	-	-	1.16448e-42	97%

Source	InterPros	Term	Type	Identity
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GCK	IPR012891	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-
Sma3	DNA-directed DNA polymerase, family A, conserved site	IPR019760	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZD1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 110 aas, your sequence is shorter than subject: 84 - 217

Fln protein: MAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSITVDDKVIKAQIWDTAGQERCAFLLGALKL*

Protein Length: 85

Fln nts: ATGGGCTGAAGAGCAGGCCTTAGAATTGTAGGGTAATTTGCAGGGGACAAA_-_ATGGCTTACAGAGCAGATGATGACTACGATTATCTCTTCAAGGTGGTACTGATTGGGGACTCTGGTGTGGGCAAGTCCAATCTGCTGTCGAGATTTACTAGGAACGAGTTCAGTTTGGAGTCCAAATCCACCATCGGAGTCGAGTTCGCGACTCGGAGTATAACAGTCGATGATAAGGTCATAAAAGCTCAGATTTGGGACACAGCTGGTCAAGAAAGGTGCGCTTTTCTTCTTGGTGCCCTTAAGTTGTAGGGCTATTTCTGCATCTTGATGCCAGGGTACGGTACTCTAGGGTTAGGGTTTTAGGGAAGTGTTTGATCA

Fln Alignment:

AllPineV4_rep_c120183___MAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSITVDDKVIKAQIWDTAGQER
A9NZD1_______________MAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSITVDDKVIKAQIWDTAGQER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain