SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78215

Length: 368 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene78215
GTTCAGCGCGAGAGGGCGGTTGTGGTGGTTACCAGGAGCAGAAATCGTTGGCTCTCGACTTACCTGCAAAAATGACGAAACGCACGAAGAAGGCCGGTATTGTGGGGAAATATGGTACCAGATATGGTGCCAGTTTGAGAAAACAGATTAAGAAAATTTGGAATGTCGACTGACCTCCACTGTCACTCATTTTGTGGCAAGTTTGCTGTGAAGAGAAAGGCAGTTGGGATTTGGGGATGCAAAGACTGCGGAAAGGTTAAGGCAGGTGGTGCATACACTCTCAATACTCCGAGTGCTGTGACTGTACGAAGTACCATTCGGCGTTTGAGGGAGCAGACTGAAGGATAAACTGTTTTTAGTTTTGTATC

Ace file of the UniGene sp_v2.0_unigene78215 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L37a, putative n=2 Tax=fabids RepID=B9RUR2_RICCO	-	-	3.0e-32	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	60s ribosomal protein l37a	-	-	1.80325e-34	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	1.80325e-34	97%

Source	InterPros	Term	Type	Identity
Sma3	Metallothionein, family 15, plant	IPR000347	-	-
Sma3	Ribosomal protein L37ae	IPR002674	-	-
Sma3	Ribosomal protein L37ae/L37e, N-terminal	IPR011331	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT67

Fln msg: Separated hits, possible frame ERROR between 158 and 190,

Fln protein: MTKRTKKAGIVGKYGTRYGASLRKQIKKxxxxxxxxxxxxFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTEG*

Protein Length: 94

Fln nts: GTTCAGCGCGAGAGGGCGGTTGTGGTGGTTACCAGGAGCAGAAATCGTTGGCTCTCGACTTACCTGCAAAA_-_ATGACGAAACGCACGAAGAAGGCCGGTATTGTGGGGAAATATGGTACCAGATATGGTGCCAGTTTGAGAAAACAGATTAAGAAAATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTTTGTGGCAAGTTTGCTGTGAAGAGAAAGGCAGTTGGGATTTGGGGATGCAAAGACTGCGGAAAGGTTAAGGCAGGTGGTGCATACACTCTCAATACTCCGAGTGCTGTGACTGTACGAAGTACCATTCGGCGTTTGAGGGAGCAGACTGAAGGATAA___ACTGTTTTTAGTTTTGTATC

Fln Alignment:

AllPineV4_rep_c119795___MTKRTKKAGIVGKYGTRYGASLRKQIKKIxxxxxxxxxxxFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTEG
A9NT67_______________MTKRTKKAGIVGKYGTRYGASLRKQIKKMxxxxxxxxxxxFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain